Jatropha Genome Database

JcCB0019891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019891.20 + phase: 1 /pseudo/partial
         (69 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00340.1 | Symbols: PSAB | Encodes the D1 subunit of photosys...    91   2e-19

>ATCG00340.1 | Symbols: PSAB | Encodes the D1 subunit of photosystem
           I  and II reaction centers. | chrC:37375-39579 REVERSE
          Length = 734

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 56/75 (74%), Gaps = 7/75 (9%)

Query: 2   MLAFGIPEKQILIELIFDQWL*SAFGKTSY------ASTNSAATNVG*SIRLPG*LN-VN 54
           MLAFG PEKQILIE IF QW+ SA GKTSY      +ST+  A N G SI LPG LN +N
Sbjct: 443 MLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTSGPAFNAGRSIWLPGWLNAIN 502

Query: 55  ENSNSLFLTIGPGDF 69
           ENSNSLFLTIGPGDF
Sbjct: 503 ENSNSLFLTIGPGDF 517