Jatropha Genome Database

JcCB0019451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.20 - phase: 2 /TE/partial
         (1105 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...   132   2e-30
AT3G42723.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/ n...    54   5e-07
AT3G29750.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/ a...    53   1e-06

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 84/120 (70%), Gaps = 4/120 (3%)

Query: 336 NQKKCFFGRKLVEYLGH--IISKDGVAMDPSKVSSILQWPIPKSTKAVRGFLGITGYYRR 393
           N+KKC FG+  + YLGH  IIS +GV+ DP+K+ +++ WP PK+T  +RGFLG+TGYYRR
Sbjct: 19  NRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR 78

Query: 394 FIANYGQLARPLTTLLKDAQAKFAWPQDAQDAFIALKHAMTTSPVLAMPDFSKPFIVETD 453
           F+ NYG++ RPLT LLK    K  W + A  AF ALK A+TT PVLA+PD   PF+    
Sbjct: 79  FVKNYGKIVRPLTELLKKNSLK--WTEMAALAFKALKGAVTTLPVLALPDLKLPFVTRVG 136


>AT3G42723.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/
           nucleotide binding | chr3:14838392-14841189 REVERSE
          Length = 818

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 3   CSNLQLFLGSYTISGDFFIFPLRG--VDIILGVAWLETLGDVQVNWQRLTMKFLHQNQLV 60
           C  + L +    I  D+ ++ L+   VD+ILG  WL  LG+ +VNWQ  +  F+H    V
Sbjct: 506 CQEISLRINDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQNQSFSFIHNQDWV 565

Query: 61  ELC-GDPSLTRGTILAKSFSK 80
            LC  +  L +GT   K  S+
Sbjct: 566 TLCPKNKDLEQGTKRVKMRSE 586


>AT3G29750.1 | Symbols:  | ATP binding / aminoacyl-tRNA ligase/
           aspartic-type endopeptidase/ nucleotide binding |
           chr3:11579125-11580600 REVERSE
          Length = 421

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 1   GVCSNLQLFLGSYTISGDFFIFPL--RGVDIILGVAWLETLGDVQVNWQRLTMKFLHQNQ 58
           G C  ++L++    I+ +F +  L    VD+ILG  WL  LG+  VNWQ     F H  Q
Sbjct: 180 GTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQ 239

Query: 59  LVELCGD 65
            + LC +
Sbjct: 240 WITLCAE 246