Jatropha Genome Database

JcCB0019451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.10 + phase: 0 
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44680.1 | Symbols: HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9...   358   1e-99
AT4G38130.1 | Symbols: HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HIS...   250   3e-67
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | HD1 (HIS...   250   4e-67
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | H...   240   5e-64
AT5G35600.1 | Symbols: HDA7 | HDA7 (histone deacetylase7); histo...   199   1e-51
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | HDA08; histone deac...    55   4e-08
AT5G26040.2 | Symbols: HDA2 | HDA2; histone deacetylase | chr5:9...    52   1e-07
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | HDA05 (HISTONE DEAC...    48   4e-06

>AT3G44680.1 | Symbols: HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9);
           histone deacetylase | chr3:16226769-16229752 REVERSE
          Length = 426

 Score =  358 bits (918), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 162/188 (86%), Positives = 178/188 (94%)

Query: 1   MRSKDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL 60
           MRSKD+I+YFYDGDVG VYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHS DYVEFL RI P+ Q+LF NE+ RYNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct: 61  AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct: 121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query: 181 EAFFFTDR 188
           EAF+FTDR
Sbjct: 181 EAFYFTDR 188


>AT4G38130.1 | Symbols: HD1, HDA19, ATHD1, HDA1, RPD3A | HD1
           (HISTONE DEACETYLASE 1); basal transcription repressor/
           histone deacetylase/ protein binding |
           chr4:17896493-17899057 REVERSE
          Length = 501

 Score =  250 bits (639), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 143/185 (77%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K ++ YFYD +VG  Y+G  HPMKPHR+ MTH L+  Y L + M++ +P  A   +L +F
Sbjct: 16  KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75

Query: 64  HSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQ 123
           H+ DYV FL  ITP+TQ     +L R+N+GEDCPVF+ L+ FCQ YAGG++  + +LN+ 
Sbjct: 76  HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHG 135

Query: 124 LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAF 183
           LCDIAINWAGGLHHAKKCEASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF
Sbjct: 136 LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAF 195

Query: 184 FFTDR 188
           + TDR
Sbjct: 196 YATDR 200


>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | HD1
           (HISTONE DEACETYLASE 1); basal transcription repressor/
           histone deacetylase/ protein binding |
           chr4:17896663-17899057 REVERSE
          Length = 469

 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 143/185 (77%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K ++ YFYD +VG  Y+G  HPMKPHR+ MTH L+  Y L + M++ +P  A   +L +F
Sbjct: 16  KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75

Query: 64  HSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQ 123
           H+ DYV FL  ITP+TQ     +L R+N+GEDCPVF+ L+ FCQ YAGG++  + +LN+ 
Sbjct: 76  HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHG 135

Query: 124 LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAF 183
           LCDIAINWAGGLHHAKKCEASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF
Sbjct: 136 LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAF 195

Query: 184 FFTDR 188
           + TDR
Sbjct: 196 YATDR 200


>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6
           (HISTONE DEACETYLASE 6); histone deacetylase |
           chr5:25315834-25318227 REVERSE
          Length = 471

 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K R++YFY+  +G  Y+G  HPMKPHR+ M H L++ Y LH+++EI RP  A   ++ +F
Sbjct: 18  KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRF 77

Query: 64  HSADYVEFLHRITPDT--QHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLN 121
           HS +YV+FL  ++P++      A  L R+N+GEDCPVF+ LF+FC+  AGG+I AA +LN
Sbjct: 78  HSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLN 137

Query: 122 NQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEE 181
            Q  DIAINW GGLHHAKK EASGFCY+ND+VLGILELLK   RVLYIDIDVHHGDGVEE
Sbjct: 138 RQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEE 197

Query: 182 AFFFTDR 188
           AF+ TDR
Sbjct: 198 AFYTTDR 204


>AT5G35600.1 | Symbols: HDA7 | HDA7 (histone deacetylase7); histone
           deacetylase | chr5:13770121-13771712 REVERSE
          Length = 409

 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 132/191 (69%), Gaps = 6/191 (3%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K R++YFY+  +G  Y+G N P KP R+ +TH+L+LSY LH+ MEI  P  A   +  +F
Sbjct: 9   KRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKF 68

Query: 64  HSADYVEFLHRITPDT---QHLFANE-LVRYNLGEDC--PVFENLFEFCQIYAGGTIDAA 117
           HS +Y+ FL  +TP+T    H   +E L R+N+  D   PVF NLF++C+ YAGG+I AA
Sbjct: 69  HSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAA 128

Query: 118 RRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGD 177
            +LN Q  DIAINWAGG+HH KK +ASGF Y+ND+VL ILELLK   RVLYI+I   HGD
Sbjct: 129 AKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPHGD 188

Query: 178 GVEEAFFFTDR 188
            VEEAF  TDR
Sbjct: 189 EVEEAFKDTDR 199


>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | HDA08; histone
           deacetylase | chr1:2672527-2674469 FORWARD
          Length = 377

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 27/141 (19%)

Query: 59  ELAQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLF------EFCQIYAGG 112
           EL  FH+++Y+E L  +  D              GE C +    F      E   + AG 
Sbjct: 74  ELLMFHTSEYIEKL--VEADKS------------GERCEIAAGTFMSPGSWEAALLAAGT 119

Query: 113 TIDAARRLNNQLCDIA---INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHA--RVL 167
           T+ A + + +    IA   +   G  HH++  +A G+C++N+  L +   L   +  RV 
Sbjct: 120 TLSAMQHILDCHGKIAYALVRPPG--HHSQPTQADGYCFLNNAALAVKLALNSGSCSRVA 177

Query: 168 YIDIDVHHGDGVEEAFFFTDR 188
            IDIDVH+G+G  E F+ +D+
Sbjct: 178 VIDIDVHYGNGTAEGFYTSDK 198


>AT5G26040.2 | Symbols: HDA2 | HDA2; histone deacetylase |
           chr5:9099321-9101598 REVERSE
          Length = 387

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 3   SKDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQ 62
           SK  I Y    D+  +     HP    +       ++S    ++  I  P +A  ++L  
Sbjct: 72  SKVSIIYSSSYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLV 131

Query: 63  FHSADYVEFLH------RITPDTQ-HLFANELVRYNLGEDCPVFENLFEFCQIYAGGTID 115
            HS +Y+  L       RIT       F N LV+  +         L+ F +   GGTI 
Sbjct: 132 VHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKV---------LYPFRK-QVGGTIL 181

Query: 116 AARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGI-LELLKYH-ARVLYIDIDV 173
           AA+    +    AIN  GG HH       GFC   D+ L I    L+   +RV+ ID+D 
Sbjct: 182 AAKLATER--GWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDA 239

Query: 174 HHGDG 178
           H G+G
Sbjct: 240 HQGNG 244


>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | HDA05 (HISTONE
           DEACETYLASE 5); histone deacetylase |
           chr5:24567137-24570917 REVERSE
          Length = 660

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 21  GPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80
           G +HP  P R+ +    +    + ++  +    KA    L   H+ D+V  +  I+   +
Sbjct: 43  GEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQK 102

Query: 81  HLFANEL------VRYNLGEDCPVFENLFEFCQIYAGGTIDAARRL-NNQL-CDIAINWA 132
               N +      +  N G          E   + AG  +  A ++   +L C  AI   
Sbjct: 103 DYRRNRIASQLNSIYLNGGSS--------EAAYLAAGSVVKLAEKVAEGELDCGFAIVRP 154

Query: 133 GGLHHAKKCEASGFCYINDLVLGILELLKYH-----ARVLYIDIDVHHGDGVEEAFF 184
            G HHA+  EA GFC  N++ +    LL         ++L +D DVHHG+G ++ F+
Sbjct: 155 PG-HHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFW 210