Jatropha Genome Database

JcCB0018541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.30 + phase: 0 /short
         (46 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61670.1 | Symbols:  | unknown protein | chr3:22819052-228218...    66   3e-12
AT2G46380.1 | Symbols:  | unknown protein | chr2:19039377-190421...    55   1e-08
AT5G05190.1 | Symbols:  | unknown protein | chr5:1541853-1543875...    54   2e-08
AT3G56410.2 | Symbols:  | unknown protein | chr3:20916320-209211...    48   1e-06
AT3G56410.1 | Symbols:  | unknown protein | chr3:20916320-209208...    48   1e-06

>AT3G61670.1 | Symbols:  | unknown protein |
          chr3:22819052-22821870 FORWARD
          Length = 790

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 30/39 (76%)

Query: 1  MADSTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          MADSTKVRLVRCPKCENLL E  D   +QCGGC  VLR 
Sbjct: 1  MADSTKVRLVRCPKCENLLSEPEDSPFFQCGGCFTVLRA 39


>AT2G46380.1 | Symbols:  | unknown protein |
          chr2:19039377-19042171 FORWARD
          Length = 768

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 2/39 (5%)

Query: 1  MADSTKV--RLVRCPKCENLLPELADYSVYQCGGCGAVL 37
          MA+S+ +  RLVRCPKC+NLL E  D   +QCGGCG VL
Sbjct: 1  MAESSTIEARLVRCPKCKNLLQEPKDCPFFQCGGCGTVL 39


>AT5G05190.1 | Symbols:  | unknown protein | chr5:1541853-1543875
          FORWARD
          Length = 615

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 1  MADST--KVRLVRCPKCENLLPELADYSVYQCGGCGAVLRG 39
          MA  T  K+RLVRCPKC  +L E  D  VYQCGGC A+L+ 
Sbjct: 1  MASQTGQKIRLVRCPKCLKILQEDEDVPVYQCGGCSAILQA 41


>AT3G56410.2 | Symbols:  | unknown protein |
          chr3:20916320-20921134 REVERSE
          Length = 1535

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 4  STKVRLVRCPKCENLLPELADYSVYQCGGCGAVL 37
          S++ R+VRCPKC  LL E  D + Y+CGGC ++L
Sbjct: 61 SSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSIL 94


>AT3G56410.1 | Symbols:  | unknown protein |
          chr3:20916320-20920877 REVERSE
          Length = 1488

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 4  STKVRLVRCPKCENLLPELADYSVYQCGGCGAVL 37
          S++ R+VRCPKC  LL E  D + Y+CGGC ++L
Sbjct: 14 SSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSIL 47