Jatropha Genome Database

JcCB0018541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018541.20 + phase: 0 
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61660.1 | Symbols:  | unknown protein | chr3:22816152-228165...    69   6e-13

>AT3G61660.1 | Symbols:  | unknown protein | chr3:22816152-22816541
           FORWARD
          Length = 129

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 25  IWDLGSPLYDSYELVSVSYLIERHLMTLPSLGGGSRRLISRKVLPPPHPATIFVGAAAAG 84
           +WD GSPLYDSYELVS++++IERH M+LPSL G  +   SR+  P         GA    
Sbjct: 9   LWDCGSPLYDSYELVSLTHIIERHFMSLPSLAGAGKVCCSRR--PSDLEEKANRGANTVV 66

Query: 85  D-CNHDRSSMVKSFRGFVKERLWRKKRNA 112
           D C    S+  K   G    + W++K+N 
Sbjct: 67  DLCCSSDSTTGKLLCGAFGTKWWKRKQNT 95