Jatropha Genome Database

JcCB0018351.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.30 - phase: 2 /partial
         (82 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03340.1 | Symbols: WRKY3 | WRKY3; transcription factor | chr...    75   9e-15
AT1G13960.1 | Symbols: WRKY4 | WRKY4; DNA binding / transcriptio...    55   1e-08
AT1G13960.2 | Symbols: WRKY4 | WRKY4; DNA binding / transcriptio...    54   1e-08
AT2G38470.1 | Symbols: WRKY33, ATWRKY33 | WRKY33; transcription ...    49   7e-07
AT3G01080.1 | Symbols: WRKY58, ATWRKY58 | WRKY58; transcription ...    47   2e-06

>AT2G03340.1 | Symbols: WRKY3 | WRKY3; transcription factor |
           chr2:1014724-1016936 REVERSE
          Length = 513

 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 11/71 (15%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGSIHSTVNSNSAELKQQDMEKQDNRRDLGSNNQQPI 71
           +ATDPKAV+TTYEGKHNHD+PAA+ S H    +N           Q N   +  N+QQP+
Sbjct: 454 AATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNN-----------QHNTSTVNFNHQQPV 502

Query: 72  ARLRLKEGQIT 82
           ARLRLKE QIT
Sbjct: 503 ARLRLKEEQIT 513


>AT1G13960.1 | Symbols: WRKY4 | WRKY4; DNA binding / transcription
           factor | chr1:4776622-4779043 FORWARD
          Length = 514

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 14/76 (18%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGSIHSTVNSNSAELKQQDMEKQDNRRDLGSN----- 66
           +ATDPKAV+TTYEGKHNHDLPAAK    S+  + +A+L      + DNR    +N     
Sbjct: 448 AATDPKAVVTTYEGKHNHDLPAAK---SSSHAAAAAQL------RPDNRPGGLANLNQQQ 498

Query: 67  NQQPIARLRLKEGQIT 82
            QQP+ARLRLKE Q T
Sbjct: 499 QQQPVARLRLKEEQTT 514


>AT1G13960.2 | Symbols: WRKY4 | WRKY4; DNA binding / transcription
           factor | chr1:4776622-4779043 FORWARD
          Length = 487

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 14/76 (18%)

Query: 12  SATDPKAVITTYEGKHNHDLPAAKGSIHSTVNSNSAELKQQDMEKQDNRRDLGSN----- 66
           +ATDPKAV+TTYEGKHNHDLPAAK    S+  + +A+L      + DNR    +N     
Sbjct: 421 AATDPKAVVTTYEGKHNHDLPAAK---SSSHAAAAAQL------RPDNRPGGLANLNQQQ 471

Query: 67  NQQPIARLRLKEGQIT 82
            QQP+ARLRLKE Q T
Sbjct: 472 QQQPVARLRLKEEQTT 487


>AT2G38470.1 | Symbols: WRKY33, ATWRKY33 | WRKY33; transcription
           factor | chr2:16108476-16110539 FORWARD
          Length = 519

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 25/27 (92%)

Query: 15  DPKAVITTYEGKHNHDLPAAKGSIHST 41
           D +AVITTYEGKHNHD+PAA+GS ++T
Sbjct: 404 DMRAVITTYEGKHNHDVPAARGSGYAT 430


>AT3G01080.1 | Symbols: WRKY58, ATWRKY58 | WRKY58; transcription
           factor | chr3:25507-27449 FORWARD
          Length = 423

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 23/88 (26%)

Query: 10  KESATDPKAVITTYEGKHNHDLPAAKG------------SIHSTVNSNSAELKQQDMEKQ 57
           + ++TD KAVITTYEGKHNHD+PAA+             S H  + S S    QQ M   
Sbjct: 343 ERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHRMRSMSGNNMQQHMS-- 400

Query: 58  DNRRDLGSNN---QQPIARLRLKEGQIT 82
                 G+NN   Q P+  LRLKE +IT
Sbjct: 401 -----FGNNNNTGQSPVL-LRLKEEKIT 422