Jatropha Genome Database

JcCB0018351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.20 + phase: 0 /partial/short
         (49 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13970.1 | Symbols:  | unknown protein | chr1:4779742-4781882...    88   1e-18
AT3G29180.1 | Symbols:  | unknown protein | chr3:11149073-111513...    79   4e-16
AT5G39430.1 | Symbols:  | unknown protein | chr5:15775302-157775...    72   8e-14
AT1G10410.1 | Symbols:  | INVOLVED IN: N-terminal protein myrist...    63   4e-11
AT1G59650.1 | Symbols: CW14 | CW14 | chr1:21920099-21922670 FORWARD    62   5e-11

>AT1G13970.1 | Symbols:  | unknown protein | chr1:4779742-4781882
           REVERSE
          Length = 504

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 44/47 (93%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTR 47
           K+GI ++GLTIQAQ PEELPEQVLCCVRLNKIDFVNHGQIPT++T +
Sbjct: 457 KNGILDLGLTIQAQSPEELPEQVLCCVRLNKIDFVNHGQIPTLLTNK 503


>AT3G29180.1 | Symbols:  | unknown protein | chr3:11149073-11151322
           FORWARD
          Length = 513

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 42/48 (87%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRD 48
           K+G  ++GLTIQAQKPEELPEQVLCC+RL+KIDFV+HGQIP ++   D
Sbjct: 461 KNGTLDLGLTIQAQKPEELPEQVLCCLRLSKIDFVDHGQIPMLLIPED 508


>AT5G39430.1 | Symbols:  | unknown protein | chr5:15775302-15777599
           REVERSE
          Length = 511

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/44 (70%), Positives = 41/44 (93%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIV 44
           K+G  ++GLTIQAQK EELPE+VLCC+RL+KIDFV++GQIPT++
Sbjct: 458 KNGTLDLGLTIQAQKQEELPEKVLCCLRLSKIDFVDNGQIPTLL 501


>AT1G10410.1 | Symbols:  | INVOLVED IN: N-terminal protein
           myristoylation; LOCATED IN: chloroplast; EXPRESSED IN:
           24 plant structures; EXPRESSED DURING: 15 growth stages;
           CONTAINS InterPro DOMAIN/s: Protein of unknown function
           DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana
           protein match is: CW14 (TAIR:AT1G59650.1); Has 144 Blast
           hits to 144 proteins in 21 species: Archae - 0; Bacteria
           - 0; Metazoa - 9; Fungi - 2; Plants - 115; Viruses - 0;
           Other Eukaryotes - 18 (source: NCBI BLink). |
           chr1:3416842-3419264 REVERSE
          Length = 485

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 4   IANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           + +VGLTIQ  KPEELPEQ+LCCVRLN IDF+N+ Q+
Sbjct: 444 VLDVGLTIQGNKPEELPEQILCCVRLNGIDFMNYHQL 480


>AT1G59650.1 | Symbols: CW14 | CW14 | chr1:21920099-21922670 FORWARD
          Length = 492

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 34/40 (85%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           K+ + +VGLTIQ  KPEELPEQ+LCC+RLN ID++N+ Q+
Sbjct: 446 KNCVLDVGLTIQGNKPEELPEQILCCIRLNGIDYMNYHQL 485