Jatropha Genome Database

JcCB0018211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018211.10 + phase: 0 /partial
         (374 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SA...   442   e-124
AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2); transf...   182   4e-46
AT1G32900.1 | Symbols:  | starch synthase, putative | chr1:11920...   153   2e-37
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase, tr...    72   6e-13
AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch...    67   2e-11

>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF
           SALICYLIC ACID INSENSITIVITY 1); starch synthase/
           transferase, transferring glycosyl groups |
           chr5:8266934-8270860 FORWARD
          Length = 652

 Score =  442 bits (1138), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/317 (66%), Positives = 245/317 (77%), Gaps = 22/317 (6%)

Query: 80  LVLGAETDESGSVIGFNLISQSGAEEIES------HEDVAVDTAEEIVDAE--------- 124
            +  AE D SGSV+GF L      + + +      H +   +  ++IV A+         
Sbjct: 65  FITDAERDGSGSVLGFQLTPPGDQQTVSTSTGEITHHEEKKEAIDQIVMADFGVPGNRAV 124

Query: 125 -------GREKAQTRVKHSIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPR 177
                  G    +  V +++VFVT+EAAPYSKTGGLGDVCGSLPIALA RGHRVMV+SPR
Sbjct: 125 EEGAAEVGIPSGKAEVVNNLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPR 184

Query: 178 YLHGSPQDKNLVNAVDLNCRVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSYHRPGNPYG 237
           YL+G+  DKN   A DL  RV V CFGG+QEVSF+HEYR+GVDWVFVDH SYHRPGNPYG
Sbjct: 185 YLNGTAADKNYARAKDLGIRVTVNCFGGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNPYG 244

Query: 238 DGRGAFGDNQFRFTVLCHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHP 297
           D +GAFGDNQFRFT+LCHAACEAPLVLPLGG+TYGEK LFL NDWHA LVP+LLAAKY P
Sbjct: 245 DSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRP 304

Query: 298 FGVYKDARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVN 357
           +GVYKDARS+L+IHNLAHQGVEPA TY N GLP EWYGA+ WVFPTWARTHALDTGEAVN
Sbjct: 305 YGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVN 364

Query: 358 ILKGAIVTADRILTVSK 374
           +LKGAIVT+DRI+TVS+
Sbjct: 365 VLKGAIVTSDRIITVSQ 381


>AT3G01180.1 | Symbols: AtSS2 | AtSS2 (starch synthase 2);
           transferase, transferring glycosyl groups |
           chr3:62456-65678 REVERSE
          Length = 792

 Score =  182 bits (461), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 142/271 (52%), Gaps = 21/271 (7%)

Query: 106 IESHEDVAV-DTAEEIVDAEGREKAQTRVKHSIVFVTAEAAPYSKTGGLGDVCGSLPIAL 164
           +E   DVA  +T E   D E           +++ V AE AP+SKTGGLGDV G+LP +L
Sbjct: 271 VEKTPDVASSETNEPGKDEEKPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKSL 330

Query: 165 ASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNCRVKVYCFGGAQEVSFFHEYREGVDWVFV 224
           A RGHRVMVV PRY            A DL  R +    G   EV +FH + +GVD+VF+
Sbjct: 331 ARRGHRVMVVVPRYAE-------YAEAKDLGVRKRYKVAGQDMEVMYFHAFIDGVDFVFI 383

Query: 225 DHPSY-HRPGNPYGDGRGAFGDNQFRFTVLCHAACEAPLVLPLGGYTYGEKCL-FLANDW 282
           D P + H   N YG  R    D   R  + C AA E P  +P GG  YG+  L F+ANDW
Sbjct: 384 DSPEFRHLSNNIYGGNR---LDILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDW 440

Query: 283 HASLVPVLLAAKYHPFGVYKDARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFP 342
           H +L+PV L A Y   G+ K  RSVLVIHN+AHQG  P   +    LP  +  + +   P
Sbjct: 441 HTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPSHYLDSFKLYDP 500

Query: 343 TWARTHALDTGEAVNILKGAIVTADRILTVS 373
                     GE  NI    +  ADR+LTVS
Sbjct: 501 V--------GGEHFNIFAAGLKAADRVLTVS 523


>AT1G32900.1 | Symbols:  | starch synthase, putative |
           chr1:11920582-11923506 REVERSE
          Length = 610

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 138/250 (55%), Gaps = 23/250 (9%)

Query: 136 SIVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLN 195
           S++F+ AE  P+SKTGGLGDV G LP ALA+RGHRVM + PRY           +A D  
Sbjct: 85  SVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRY-------DQYKDAWDTC 137

Query: 196 CRVKVYCFGGAQEVSFFHEYREGVDWVFVDHPSY-----HRPGNP-YGDGRGA-FGDNQF 248
             V++      + V FFH Y+ GVD VFVDHP +      + G+  YG   G  + DNQ 
Sbjct: 138 VVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQL 197

Query: 249 RFTVLCHAACEAPLVLPLGGYT-----YGEKCLFLANDWHASLVPVLLAAKYHPFGVYKD 303
           RF++LC AA EAP VL L         YGE  +F+ANDWH +L+P  L + Y   GVY +
Sbjct: 198 RFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMN 257

Query: 304 ARSVLVIHNLAHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAI 363
           A+ V  IHN+A+QG      Y    LP  +  + +++            G  +N +K AI
Sbjct: 258 AKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFM----DGYEKPVKGRKINWMKAAI 313

Query: 364 VTADRILTVS 373
           + A R+LTVS
Sbjct: 314 LEAHRVLTVS 323


>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase,
           transferring glycosyl groups | chr4:10082221-10087044
           FORWARD
          Length = 1040

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 107/240 (44%), Gaps = 24/240 (10%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           +V + AE AP +K GGLGDV   L  AL  +GH V ++ P+Y     Q   + +   L+ 
Sbjct: 544 VVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKY--DCMQYDRVRDLRALDT 601

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVD--HPS-YHRPGNPYGDGRGAFGDNQFRFTVL 253
            V+ Y  G   +   +    EG+   F++  HPS +   G  YG+      D+  RF+  
Sbjct: 602 VVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGE-----QDDFRRFSYF 656

Query: 254 CHAACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
             AA E  L+L  G       C    +DW  + V  L    Y P G+   AR     HN 
Sbjct: 657 SRAALE--LLLQSGKKPDIIHC----HDWQTAFVAPLYWDLYAPKGL-DSARICFTCHNF 709

Query: 314 AHQGVEPAVTYKNFGLPPEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVS 373
            +QG   A    + GL            P   + H+  +G+ VN +KGAI+ ++ + TVS
Sbjct: 710 EYQGTASASELGSCGLDVNQLNR-----PDRMQDHS--SGDRVNPVKGAIIFSNIVTTVS 762


>AT1G11720.1 | Symbols: ATSS3 | ATSS3 (starch synthase 3); starch
           synthase/ transferase, transferring glycosyl groups |
           chr1:3952511-3956840 FORWARD
          Length = 1025

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 80/178 (44%), Gaps = 20/178 (11%)

Query: 137 IVFVTAEAAPYSKTGGLGDVCGSLPIALASRGHRVMVVSPRYLHGSPQDKNLVNAVDLNC 196
           IV +  E AP +K GGLGDV  SL  A+    H V +V P+Y        N V  +  N 
Sbjct: 579 IVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKY---DCIKHNFVKDLQFN- 634

Query: 197 RVKVYCFGGAQEVSFFHEYREGVDWVFVD-HPSYHRPGNPYGDGRGAFGDNQFRFTVLCH 255
             + Y +GG  E+  +H   EG+   F+D      + G  YG       D+  RF   CH
Sbjct: 635 --RSYHWGGT-EIKVWHGKVEGLSVYFLDPQNGLFQRGCVYG-----CADDAGRFGFFCH 686

Query: 256 AACEAPLVLPLGGYTYGEKCLFLANDWHASLVPVLLAAKYHPFGVYKDARSVLVIHNL 313
           AA E    L  GG+      +   +DW ++ V  L    Y  +G+ K  R V  IHNL
Sbjct: 687 AALE---FLLQGGF---HPDILHCHDWSSAPVSWLFKDHYTQYGLIK-TRIVFTIHNL 737