Jatropha Genome Database

JcCB0018201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018201.10 - phase: 0 /pseudo
         (349 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04560.1 | Symbols:  | transferase, transferring glycosyl gro...   204   7e-53

>AT2G04560.1 | Symbols:  | transferase, transferring glycosyl groups
           | chr2:1590341-1592667 REVERSE
          Length = 455

 Score =  204 bits (519), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 135/184 (73%), Gaps = 2/184 (1%)

Query: 165 FPKXTWSTFSLAPNQLVEDYIKAFVHKWPVPAIVVPGGHPRMKYDAFNASTVALCTSGTV 224
           FPK   +   +A N  V+ YI     +WPVPAI+VP G  ++KYDAF AS  ALCTSGTV
Sbjct: 273 FPK-LVTLIHVASNNQVDHYIGESFSEWPVPAILVPSGSTQLKYDAFGASQAALCTSGTV 331

Query: 225 AVELQLARLPCVVAYRAHLLTESFIQYKAKIPYISLPNILMDSAIIPEALFHACTPTNLA 284
           AVELQLA LP +VAYRAH LTE  I+YKAKIPYISLPNIL+DS IIPEALF AC P+NLA
Sbjct: 332 AVELQLAHLPSLVAYRAHFLTELLIRYKAKIPYISLPNILLDSPIIPEALFQACNPSNLA 391

Query: 285 SLLKELMHNKELQEKQIVAAEKVISLLFPSERIIYNSAEQVKERSFSSFSPSIMAASTIL 344
           S+L+ L+ +++++E+Q+V AEK+I LL PSE  + NS       S   ++PSI+AASTIL
Sbjct: 392 SILERLLLDEKMRERQVVGAEKLIQLLHPSESRMGNSIHCTGLES-HRYTPSILAASTIL 450

Query: 345 WHVK 348
            + +
Sbjct: 451 SYAR 454