Jatropha Genome Database

JcCB0017941.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.30 + phase: 0 
         (388 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13030.1 | Symbols:  | unknown protein | chr4:7607400-7609656...   105   6e-23
AT4G13030.2 | Symbols:  | unknown protein | chr4:7607400-7609656...   105   6e-23

>AT4G13030.1 | Symbols:  | unknown protein | chr4:7607400-7609656
           FORWARD
          Length = 481

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 70  LNELRYKLQIYRSGDYWVPTGGLKKEEMDIPPIVTILLVGFSSSGKSSLVNLMYSVLGRT 129
           L + R ++  Y  G +      +K  + +IP   +I+LVG   +GKSSLVN +  V+   
Sbjct: 78  LRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAGKSSLVNKITRVIEDD 133

Query: 130 GLVLFAQTKSGSGKKNYTTMFMEEHNVLRSIKSGFCVYDSRGFNYDKVGEALEELSSWMS 189
             +L    +S        T F++E+ + R   + FC+YD+RG +     +    +  WM+
Sbjct: 134 AFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSRISSSDNTSMIEQWMT 193

Query: 190 DGVHHNQLCLRSGDHNVLLKDIDAEQLSSRNSSKFIQRRVNCAMVVVNVAEVYKALKAGD 249
            GV H +  + + D + L      ++L     + + +R+VN  + VVN  E+ K+++   
Sbjct: 194 RGVLHGEPVIWASDSSDL-----KDRLIRDGGTGYERRKVNSIIFVVNAVEILKSMECET 248

Query: 250 SKPLEATKELFCSSALRNCNENPILILTHGDLLTSEERIEGRLKICESLGISETNGIYDV 309
           S     T   F S  L   ++ P +++THGD+L+ EER   R+ + E LGI     I+D+
Sbjct: 249 SYASMITTA-FNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGELLGIPPHKQIFDI 307

Query: 310 VCLTEYGFLAEESDPVSAYNVAEAVYRALLISDRE--HLPKKTL 351
                     E  D  +A  +   +  +L  +D+    LPKK  
Sbjct: 308 ---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 342


>AT4G13030.2 | Symbols:  | unknown protein | chr4:7607400-7609656
           FORWARD
          Length = 479

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 70  LNELRYKLQIYRSGDYWVPTGGLKKEEMDIPPIVTILLVGFSSSGKSSLVNLMYSVLGRT 129
           L + R ++  Y  G +      +K  + +IP   +I+LVG   +GKSSLVN +  V+   
Sbjct: 76  LRQARNEILSYTPGSW----SDVKLSDYNIPKTTSIMLVGPKGAGKSSLVNKITRVIEDD 131

Query: 130 GLVLFAQTKSGSGKKNYTTMFMEEHNVLRSIKSGFCVYDSRGFNYDKVGEALEELSSWMS 189
             +L    +S        T F++E+ + R   + FC+YD+RG +     +    +  WM+
Sbjct: 132 AFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSRISSSDNTSMIEQWMT 191

Query: 190 DGVHHNQLCLRSGDHNVLLKDIDAEQLSSRNSSKFIQRRVNCAMVVVNVAEVYKALKAGD 249
            GV H +  + + D + L      ++L     + + +R+VN  + VVN  E+ K+++   
Sbjct: 192 RGVLHGEPVIWASDSSDL-----KDRLIRDGGTGYERRKVNSIIFVVNAVEILKSMECET 246

Query: 250 SKPLEATKELFCSSALRNCNENPILILTHGDLLTSEERIEGRLKICESLGISETNGIYDV 309
           S     T   F S  L   ++ P +++THGD+L+ EER   R+ + E LGI     I+D+
Sbjct: 247 SYASMITTA-FNSPILLFKDDKPAVVMTHGDMLSREERARVRVFLGELLGIPPHKQIFDI 305

Query: 310 VCLTEYGFLAEESDPVSAYNVAEAVYRALLISDRE--HLPKKTL 351
                     E  D  +A  +   +  +L  +D+    LPKK  
Sbjct: 306 ---------PESRDTATAITICNLLCYSLQHADKNFVFLPKKNF 340