Jatropha Genome Database

JcCB0017941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.20 - phase: 0 
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27820.1 | Symbols:  | ribosomal protein L18 family protein |...   187   8e-49
AT3G20230.1 | Symbols:  | 50S ribosomal protein L18 family | chr...    74   1e-14
AT1G08845.2 | Symbols:  | structural constituent of ribosome | c...    62   6e-11
AT1G08845.1 | Symbols:  | structural constituent of ribosome | c...    62   7e-11
AT3G45020.1 | Symbols:  | 50S ribosomal protein-related | chr3:1...    54   1e-08

>AT5G27820.1 | Symbols:  | ribosomal protein L18 family protein |
           chr5:9860584-9860928 FORWARD
          Length = 114

 Score =  187 bits (476), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 107/115 (93%), Gaps = 1/115 (0%)

Query: 1   MVIPPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMEN 60
           MVIPP V+ PPR+ +YLKPYVLKMHFTNK+V AQVIHSPTATVACSASSQEKALR +M+ 
Sbjct: 1   MVIPPAVR-PPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDI 59

Query: 61  TRDVAAAAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKLL 115
           TRDVAAA+KIGKIL ERLL+KDIPAV++ +K+EQ+YHGKVKAV+D+VR++GVKLL
Sbjct: 60  TRDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114


>AT3G20230.1 | Symbols:  | 50S ribosomal protein L18 family |
           chr3:7055639-7056679 REVERSE
          Length = 187

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 66/109 (60%)

Query: 4   PPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD 63
           P    W  R   Y++P++L + F+ K++ A+V+H PT+ V   A++  + +R+++ +  D
Sbjct: 75  PNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVD 134

Query: 64  VAAAAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGV 112
             A   IGK++AER +  D+ AVS   ++ ++  GK+  V+D +++ G+
Sbjct: 135 NEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT1G08845.2 | Symbols:  | structural constituent of ribosome |
           chr1:2838789-2840955 FORWARD
          Length = 234

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 7   VKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAA 66
           V +  R   Y++P+ L +  + ++VSA + H  T      A +  K +++ + +  D+ A
Sbjct: 122 VSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPA 181

Query: 67  AAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
              IG+IL+ER    D+   S   + + K+ GK++AVV ++ D+G+ +
Sbjct: 182 CMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229


>AT1G08845.1 | Symbols:  | structural constituent of ribosome |
           chr1:2839855-2840955 FORWARD
          Length = 189

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 7   VKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAA 66
           V +  R   Y++P+ L +  + ++VSA + H  T      A +  K +++ + +  D+ A
Sbjct: 77  VSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPA 136

Query: 67  AAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
              IG+IL+ER    D+   S   + + K+ GK++AVV ++ D+G+ +
Sbjct: 137 CMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 184


>AT3G45020.1 | Symbols:  | 50S ribosomal protein-related |
           chr3:16469167-16469568 REVERSE
          Length = 133

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 12/111 (10%)

Query: 17  LKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTR--DVAAAAKIGKIL 74
           LK YVL++  + KY++A V+      +  +AS+ E  +++S+E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 75  AERLLVKDIP-----AVSVFLKREQKYHG-----KVKAVVDAVRDSGVKLL 115
           A RL V+ +       +   +K+E +  G     KV AV++++R++GV L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114