Jatropha Genome Database
- JcCB0017431.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0017431.10 - phase: 0
(540 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 253 3e-67
AT2G03470.2 | Symbols: | myb family transcription factor / ELM2... 216 3e-56
AT2G03470.1 | Symbols: | myb family transcription factor / ELM2... 216 4e-56
AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1:... 210 2e-54
AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 114 1e-25
AT5G04110.1 | Symbols: | DNA topoisomerase II family protein | ... 100 2e-21
AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 79 7e-15
>AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: myb family
transcription factor / ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 82 Blast hits to 82 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 4; Plants - 78; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:9185620-9187213 FORWARD
Length = 493
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 188/342 (54%), Gaps = 16/342 (4%)
Query: 1 MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHLYKTTSLALDVTDDYDRG-FVKSQHH 59
MGFKRPF+ ++F ELP K +RQLD+ + TQF + + + G KSQ
Sbjct: 1 MGFKRPFEDEKFHELPLKHSRQLDYNDKSTQFEEVSPHHAGFQKTVATVNEGNLCKSQGG 60
Query: 60 HTFENNTVFEVPNFSRDIEIXXXXXXXXXXXXDEDVGSRAAAAAYPYSQGHSEFDFP-RR 118
+ E + E N+ + G R A + P+S + E D P R
Sbjct: 61 ESSEGDMFDEESNYV----YPGHDMDDTFTWDTQGCGGRDATYS-PHSGKYFELDIPPRV 115
Query: 119 FVPFEDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNN 178
F P E Y LD+ ++QVP+GP HQA IP W G +E G N S ++
Sbjct: 116 FAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADG-- 173
Query: 179 DIYNDNEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRCVRQHVMEAREKL 238
E++ GT ++PMP + + ++ G GR C C D SVRCV QH+ EARE+L
Sbjct: 174 -------EKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREEL 226
Query: 239 KNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRS 298
+ G E F+ LG +MGE+ KWS+ED + FH VVYSNP + GQNFW+ L F +R+
Sbjct: 227 VKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRT 286
Query: 299 TKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDELHGINRGS 340
KEIVS+YFNVF+LRRRA QNR+ +LDIDSDDDE HG GS
Sbjct: 287 QKEIVSFYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGS 328
>AT2G03470.2 | Symbols: | myb family transcription factor / ELM2
domain-containing protein | chr2:1045694-1047130 REVERSE
Length = 449
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 175/340 (51%), Gaps = 53/340 (15%)
Query: 1 MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHLYKTTSLALDVTDDYDRGFVKSQHHH 60
MG KRP+D++E Q+ K ARQL + N+ + +D HH
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH------------------NQFDEAI--PYHHA 40
Query: 61 TFENNT--------VFEVPNFSRDIEIXXXXXXXXXXXXDEDVGSRAAAAAYPYSQGHSE 112
+ E T + E P ++ D ++ + + S+
Sbjct: 41 SMEKKTNVLEDLIGLCENPTWTNDANHVDKGFETTGLCQEDSQSGVTTQSDLSHQSSGSD 100
Query: 113 FDFPRRFVPFEDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSL 172
F + P ED Y +++ PR+QV +G NHQA IP + +
Sbjct: 101 FTWK----PVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKE----------------EI 140
Query: 173 VSESNNDIYNDNEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRCVRQHVM 232
+ +S D E ++M C++PM D++ G GR +C CLD+GS+RCVR+H++
Sbjct: 141 LDQSEARTKEDLEGKLMRKCVIPMSDSDLCG-----TGQGRKECLCLDKGSIRCVRRHII 195
Query: 233 EAREKLKNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQ 292
EARE L ++GYE+F LG +MGEEV W+EE++ FH VVYSNP S G++FWKQL
Sbjct: 196 EARESLVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKG 255
Query: 293 VFATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDE 332
F +R+ KE+VSYYFNVF+LRRR QNR LD+DSDDDE
Sbjct: 256 TFPSRTMKELVSYYFNVFILRRRGIQNRFKALDVDSDDDE 295
>AT2G03470.1 | Symbols: | myb family transcription factor / ELM2
domain-containing protein | chr2:1045694-1047130 REVERSE
Length = 450
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 175/341 (51%), Gaps = 54/341 (15%)
Query: 1 MGFKRPFDSDEFQELPFKQARQLDFGNNLTQFAHLYKTTSLALDVTDDYDRGFVKSQHHH 60
MG KRP+D++E Q+ K ARQL + N+ + +D HH
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH------------------NQFDEAI--PYHHA 40
Query: 61 TFENNT---------VFEVPNFSRDIEIXXXXXXXXXXXXDEDVGSRAAAAAYPYSQGHS 111
+ E T + E P ++ D ++ + + S
Sbjct: 41 SMEKKTNVLVEDLIGLCENPTWTNDANHVDKGFETTGLCQEDSQSGVTTQSDLSHQSSGS 100
Query: 112 EFDFPRRFVPFEDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYS 171
+F + P ED Y +++ PR+QV +G NHQA IP +
Sbjct: 101 DFTWK----PVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKE----------------E 140
Query: 172 LVSESNNDIYNDNEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRCVRQHV 231
++ +S D E ++M C++PM D++ G GR +C CLD+GS+RCVR+H+
Sbjct: 141 ILDQSEARTKEDLEGKLMRKCVIPMSDSDLCG-----TGQGRKECLCLDKGSIRCVRRHI 195
Query: 232 MEAREKLKNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLS 291
+EARE L ++GYE+F LG +MGEEV W+EE++ FH VVYSNP S G++FWKQL
Sbjct: 196 IEARESLVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLK 255
Query: 292 QVFATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDE 332
F +R+ KE+VSYYFNVF+LRRR QNR LD+DSDDDE
Sbjct: 256 GTFPSRTMKELVSYYFNVFILRRRGIQNRFKALDVDSDDDE 296
>AT1G13880.1 | Symbols: | ELM2 domain-containing protein |
chr1:4749603-4750967 FORWARD
Length = 424
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 179/348 (51%), Gaps = 58/348 (16%)
Query: 1 MGFKRPFDSDEFQELPFKQARQLDFGNNLTQF-------AHLYKTTSLALDVTDDYDRGF 53
MGFKR FD+++ QEL K RQ+ + N L + L K + D++D Y G+
Sbjct: 1 MGFKRTFDAEDVQELNVKNGRQISYCNKLAKLDEGVPYRLSLEKPGVVGYDISDLY--GY 58
Query: 54 -VKSQHHHTFENNTVFEVPNFSRDIEIXXXXXXXXXXXXDEDVGSRAAAAAYPYSQGHSE 112
+ FE N F +ED S A + S E
Sbjct: 59 KCEDNVDKGFETNAPF---------------SWITTGLSEEDSQSGATIQS-TISHESPE 102
Query: 113 FDFPRRFVPF--EDAYCSYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSY 170
D P R V ED Y + SPR+ VP+G ++QA IP
Sbjct: 103 SDIPWRPVCSGEEDGY--WCPISPRKTVPIGSDYQADIP--------------------- 139
Query: 171 SLVSESNNDIYND----NEERMMGTCIMPMPDAESSENKNNEAGNGRTDCCCLDEGSVRC 226
V E ND +EE++ G C++PMPD E+ K G GR +C CLD+GS+RC
Sbjct: 140 ECVKEEANDQSGQGVGYDEEQVTGKCVIPMPDCETEVCK---IGKGRKECICLDKGSIRC 196
Query: 227 VRQHVMEAREKLKNSLGYEKFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNF 286
V+QH+ME RE L ++GY++ +G +MGEEV + +E+++ FH +VYSNP S ++F
Sbjct: 197 VQQHIMENREDLFATIGYDRCLDIGLCEMGEEVAARLTEDEEDLFHEIVYSNPVSMDRDF 256
Query: 287 WKQLSQVFATRSTKEIVSYYFNVFMLRRRAAQNRSNLLDIDSDDDELH 334
WK L F +R+ KEIVSYYFNVF+LRRRA QNRS LD+DSDDDE
Sbjct: 257 WKHLKSAFPSRTMKEIVSYYFNVFILRRRAIQNRSKSLDVDSDDDEWQ 304
>AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein |
chr4:6938717-6940539 FORWARD
Length = 573
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 34/211 (16%)
Query: 134 PRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEERMMGTCI 193
PRR + +G HQA + W +ES D++ + +GT I
Sbjct: 370 PRRCIKVGHQHQAQVDEW----------------------TESG----VDSDSKWLGTRI 403
Query: 194 MPMPDAESSENK--NNEAGNGRTD-CCCLDEGSVRCVRQHVMEAREKLKNSLGYEKFEHL 250
P ++E+ + N+ G GR D C C G V C R H+ E R +LK LG + F H
Sbjct: 404 WPPENSEALDQTLGNDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELG-DDFFHW 462
Query: 251 GFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVF 310
F MGEEV +W+EE+++ F ++ ++P Q+FW ++ F + +E+VSYYFNVF
Sbjct: 463 RFNQMGEEVCLRWTEEEEKRFKDMIIADP----QSFWTNAAKNFPKKKREELVSYYFNVF 518
Query: 311 MLRRRAAQNRSNLLDIDSDDDELHGINRGSY 341
++ RR QNR IDSDD+ G GS+
Sbjct: 519 LINRRRYQNRVTPKSIDSDDEGAFGSVGGSF 549
>AT5G04110.1 | Symbols: | DNA topoisomerase II family protein |
chr5:1110757-1114112 REVERSE
Length = 546
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 20/182 (10%)
Query: 135 RRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEERMMGTCIM 194
R +P+GP QA IP+W K +G F Y +SN R +GT +
Sbjct: 358 RPAIPIGPRFQAEIPVWIAPTK-----KGKF----YGSPGDSNT-------LRWLGTGVW 401
Query: 195 PMPDAESSENKNNEAGNGRTDCC-CLDEGSVRCVRQHVMEAREKLKNSLGYEKFEHLGFY 253
P + + + + + G GR+D C C S C+++H EA+E L+ + F F
Sbjct: 402 PTYSLKKTVH-SKKVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEIN-RAFSTWEFD 459
Query: 254 DMGEEVTRK-WSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVFML 312
MGEE+ K W+ +++R F A+V NP S FW+ S F +S K+++SYY+NVF++
Sbjct: 460 QMGEEIVLKSWTAKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLI 519
Query: 313 RR 314
+R
Sbjct: 520 KR 521
>AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein |
chr2:18935684-18937807 REVERSE
Length = 562
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 32/198 (16%)
Query: 140 LGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEERMMGTCIMPMPDA 199
+G QA +P W G I +++ + +GT I P+
Sbjct: 362 VGSKFQAKVPEWTG--------------------------ITPESDSKWLGTRIWPLTKE 395
Query: 200 ESSEN---KNNEAGNGRTD-CCCLDEGSVRCVRQHVMEAREKLKNSLGYEKFEHLGFYDM 255
++ N + + G GR D C C + GS+ CV+ H+ R+KLK LG F F M
Sbjct: 396 QTKANLLIERDRIGKGRQDPCGCHNPGSIECVKFHITAKRDKLKLELG-PAFYMWCFDVM 454
Query: 256 GEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYYFNVFMLRRR 315
GE + W++ + + +++ S S F Q + ++S +IVSY++NV +L+ R
Sbjct: 455 GECTLQYWTDLELKKIKSLMSSP-PSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYR 513
Query: 316 AAQNRSNLLDIDSDDDEL 333
A+Q+R DIDSD D++
Sbjct: 514 ASQSRITPHDIDSDTDQI 531