Jatropha Genome Database

JcCB0016411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016411.10 - phase: 0 /partial
         (315 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30580.1 | Symbols:  | GTP binding | chr1:10831953-10835454 R...   511   e-145
AT1G56050.1 | Symbols:  | GTP-binding protein-related | chr1:209...   193   1e-49

>AT1G30580.1 | Symbols:  | GTP binding | chr1:10831953-10835454
           REVERSE
          Length = 394

 Score =  511 bits (1316), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/289 (84%), Positives = 266/289 (92%)

Query: 27  DFMYLIDKSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD 86
           D++    K  + + AFLEIHDIAGLVRGAHEGQGLGN+FLSHIRAVDGIFHVLRAFED D
Sbjct: 74  DWLCQTYKPKSEIPAFLEIHDIAGLVRGAHEGQGLGNNFLSHIRAVDGIFHVLRAFEDAD 133

Query: 87  IIHVDDSVDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHEMCQKVKA 146
           IIHVDD VDPVRDLE I  ELRLKD+EF+ ++I+D+EKSMKRSNDKQLKIE E+ QKVKA
Sbjct: 134 IIHVDDIVDPVRDLETITEELRLKDIEFVGKKIDDVEKSMKRSNDKQLKIELELLQKVKA 193

Query: 147 WLEDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE 206
           WLEDGKDVR GDWK ADIEILNTFQLL+AKPVVYL+N+NE+DYQRKKNKFLPKIHAWVQE
Sbjct: 194 WLEDGKDVRFGDWKTADIEILNTFQLLSAKPVVYLINLNERDYQRKKNKFLPKIHAWVQE 253

Query: 207 HGGETIIPFSAAFERNLADMTPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 266
           HGG+T+IPFS  FER+LADM PDEAAKYCEENK+QSALP+IIKTGFSAINLIYFFTAGPD
Sbjct: 254 HGGDTMIPFSGVFERSLADMAPDEAAKYCEENKLQSALPRIIKTGFSAINLIYFFTAGPD 313

Query: 267 EVKCWQIRRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           EVKCWQIRRQSKAPQAAG IH+DFERGFICAEVMKFEDLKELG+E AVK
Sbjct: 314 EVKCWQIRRQSKAPQAAGAIHTDFERGFICAEVMKFEDLKELGNEPAVK 362


>AT1G56050.1 | Symbols:  | GTP-binding protein-related |
           chr1:20963793-20966181 FORWARD
          Length = 421

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 167/289 (57%), Gaps = 7/289 (2%)

Query: 32  IDKSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD 91
           +  S   V A +E  DIAGLV+GA +G+GLGN FLSHIR VD I  V+R FED DIIHV+
Sbjct: 109 LSGSQKTVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVN 168

Query: 92  DSVDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHE--MCQKVKAWLE 149
             VDP  D++VI  EL   DL+ I +RIE ++K   + +  ++K E E    ++++  L 
Sbjct: 169 GKVDPKSDIDVINLELIFCDLDQIGKRIERLKKGKAKDSQSKVKEEAEKSALERIQEALL 228

Query: 150 DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDY-QRKKNKFLPKIHAWVQE-H 207
           +GK  R       ++E++    LLT KP++Y+ N+ E D  + +KN ++ ++     +  
Sbjct: 229 EGKPARSVALSDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAYVEEVKGLSSDLQ 288

Query: 208 GGETIIPFSAAFERNLADMTPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPD 266
            G  ++  SA  E  L ++  +E  +Y     V +S L  +I+  +S + L  +FT+G  
Sbjct: 289 SGHVVV--SAQVESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEK 346

Query: 267 EVKCWQIRRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           E + W I     APQAAG IHSDFE+GFI AE + +ED    GS +A +
Sbjct: 347 ETRAWTIHAGMTAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAR 395