Jatropha Genome Database

JcCB0016371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016371.20 - phase: 0 
         (120 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07600.1 | Symbols:  | heavy-metal-associated domain-containi...    58   1e-09
AT5G48290.1 | Symbols:  | heavy-metal-associated domain-containi...    58   1e-09
AT4G05030.1 | Symbols:  | heavy-metal-associated domain-containi...    50   3e-07
AT1G55780.1 | Symbols:  | metal ion binding | chr1:20852685-2085...    47   2e-06
AT3G20180.1 | Symbols:  | metal ion binding | chr3:7043385-70438...    47   3e-06

>AT3G07600.1 | Symbols:  | heavy-metal-associated
          domain-containing protein | chr3:2424300-2424954
          REVERSE
          Length = 157

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 14/86 (16%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKI+I+++M    +R+KA+K  V   GV +  +  D +NQIEV G  VD + L + LR
Sbjct: 1  MKQKILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLR 60

Query: 61 NKLGKKDCLTCFLSNNKTYAELVSVS 86
           K+               +AELVSV+
Sbjct: 61 KKVA--------------FAELVSVA 72


>AT5G48290.1 | Symbols:  | heavy-metal-associated
          domain-containing protein | chr5:19568980-19569658
          FORWARD
          Length = 181

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 14/86 (16%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKI+I+V+M   K+R+KA+   V   GV +  +  D +NQIEV G  VD + L  +LR
Sbjct: 1  MKQKILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 60

Query: 61 NKLGKKDCLTCFLSNNKTYAELVSVS 86
           K+               +AELVSV+
Sbjct: 61 KKV--------------AFAELVSVT 72


>AT4G05030.1 | Symbols:  | heavy-metal-associated domain-containing
           protein | chr4:2576790-2577974 REVERSE
          Length = 110

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)

Query: 4   KIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKL 63
           KI++ VSM   K RS+ALKI    +GV    +  ++K+++ VIGEGVDA  L   LR K+
Sbjct: 37  KILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLRKKV 96

Query: 64  GKKDCLT 70
           G  D ++
Sbjct: 97  GFADIIS 103


>AT1G55780.1 | Symbols:  | metal ion binding |
          chr1:20852685-20853310 REVERSE
          Length = 151

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 3  QKIVIKVSMNGHKSRSKALKIVVGVSGVESAAL-GKDDKNQIEVIGEGVDAVKLTSLLRN 61
          Q+IV+K+ M+  KS  KA+KI     GV S ++ G++D  Q+ ++GEG+D  +LT     
Sbjct: 13 QRIVLKMDMSDEKSMKKAMKIASAKPGVRSVSIQGQND--QLVLLGEGIDLAELT----R 66

Query: 62 KLGKKDCLTCFLS 74
          +L KK C+T  ++
Sbjct: 67 ELKKKVCMTTIIT 79


>AT3G20180.1 | Symbols:  | metal ion binding |
          chr3:7043385-7043841 REVERSE
          Length = 118

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 7  IKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNK 62
          IK+S+N  K R KA+++ V   GV S A+  + ++++ V+G+GVD+  L   LR K
Sbjct: 3  IKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKK 58