Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (186 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04910.1 | Symbols: NSF | NSF (N-ethylmaleimide sensitive fac...   158   1e-39

>AT4G04910.1 | Symbols: NSF | NSF (N-ethylmaleimide sensitive
           factor); ATP binding / binding /
           nucleoside-triphosphatase/ nucleotide binding |
           chr4:2489696-2495666 REVERSE
          Length = 742

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVFXXXXXXXXXX 135
           +GKKLLV GTTSEV FL+S+GI D FSVT+ VP L+ +DAKKVL QLN+F          
Sbjct: 630 KGKKLLVFGTTSEVTFLESVGISDCFSVTHSVPTLQKEDAKKVLNQLNLFSEDDVDSAAE 689

Query: 136 XLNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGRQKIKIAHFYDCLQDVVRY 186
            LNDMPIKK+YMLIEMAAQGE+GGSAEAIY+GR+KI I HFYDCL D +R+
Sbjct: 690 ALNDMPIKKIYMLIEMAAQGENGGSAEAIYAGREKININHFYDCLGDFIRF 740