Jatropha Genome Database

JcCB0013651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.20 + phase: 0 
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22160.2 | Symbols:  | unknown protein | chr4:11733182-117338...    77   3e-15
AT4G22160.1 | Symbols:  | unknown protein | chr4:11733182-117336...    76   1e-14

>AT4G22160.2 | Symbols:  | unknown protein | chr4:11733182-11733880
           FORWARD
          Length = 163

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 7/92 (7%)

Query: 69  AASCFRVFSDSLSRMELAEMEMIRARETSRWEAEKRRMELDAELTRMMLRTQLQ-IASVV 127
            ++  RV SDSL R ELAEMEMI+ARE +R EAEKRR+E++ +LT+M+L+T LQ ++S+ 
Sbjct: 57  VSAMIRVLSDSLLRTELAEMEMIKAREAARLEAEKRRLEMEVDLTQMVLQTHLQAMSSLP 116

Query: 128 AGKGP----NKKRKRVEQEEDESAISTREGAL 155
            G+       +KRKR + EE ES  STRE ++
Sbjct: 117 VGEHKIYQAQRKRKRSDVEELES--STREKSI 146


>AT4G22160.1 | Symbols:  | unknown protein | chr4:11733182-11733610
           FORWARD
          Length = 142

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 5/84 (5%)

Query: 69  AASCFRVFSDSLSRMELAEMEMIRARETSRWEAEKRRMELDAELTRMMLRTQLQ-IASVV 127
            ++  RV SDSL R ELAEMEMI+ARE +R EAEKRR+E++ +LT+M+L+T LQ ++S+ 
Sbjct: 57  VSAMIRVLSDSLLRTELAEMEMIKAREAARLEAEKRRLEMEVDLTQMVLQTHLQAMSSLP 116

Query: 128 AGKGP----NKKRKRVEQEEDESA 147
            G+       +KRKR + EE ES+
Sbjct: 117 VGEHKIYQAQRKRKRSDVEELESS 140