Jatropha Genome Database

JcCB0013651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.10 - phase: 0 
         (303 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22150.1 | Symbols: PUX3 | PUX3; protein binding | chr4:11731...   401   e-112
AT4G04210.1 | Symbols: PUX4 | PUX4; protein binding | chr4:20303...   394   e-110
AT4G15410.1 | Symbols: PUX5 | PUX5 (Arabidopsis thaliana serine/...   288   2e-78
AT3G21660.1 | Symbols:  | UBX domain-containing protein | chr3:7...   141   7e-34

>AT4G22150.1 | Symbols: PUX3 | PUX3; protein binding |
           chr4:11731272-11732800 REVERSE
          Length = 367

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/306 (66%), Positives = 235/306 (76%), Gaps = 7/306 (2%)

Query: 1   MASRDKKPAKPSSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTK- 59
           M+S+DKK +KP+S RTGGIRTLSDLNRRS P        PQEY+TGGEKSGMLVQDPTK 
Sbjct: 66  MSSKDKKLSKPTSGRTGGIRTLSDLNRRSEPDSDSDSDGPQEYFTGGEKSGMLVQDPTKE 125

Query: 60  --GNDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHN 117
              +DVD IFNQARQLGAVEGPL+               RLLSGE+VP+A QQPE VIHN
Sbjct: 126 PKHDDVDEIFNQARQLGAVEGPLEHPSSSRSFTGTG---RLLSGESVPTALQQPEPVIHN 182

Query: 118 IVFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCP 177
           I+FW+NGFTV+DGPLR+LDDPENASFL+SIRKSECPKELEP D+R+ VHVNL+RRDE+CP
Sbjct: 183 IIFWSNGFTVDDGPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVNLMRRDEKCP 242

Query: 178 EPEKQRHVPFQGVGRTLGSSXXXXXXXXXXXXXLNTAPTPSMGLVVNETLPSTSIQLRLA 237
           E EK + V FQGVGRTLG +             +    +P   LVV+ETLPSTSIQLRLA
Sbjct: 243 EKEKLK-VSFQGVGRTLGGASSSTASSQSNLTDVAAVQSPLQSLVVDETLPSTSIQLRLA 301

Query: 238 DGTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLGNS 297
           DGTRM+A FN +HTVNDIR FI  SRPG   NY LQ+MGFPPK L+DP+QTIE+AGL +S
Sbjct: 302 DGTRMVAKFNNHHTVNDIRGFIEFSRPGNPNNYTLQVMGFPPKPLTDPSQTIEQAGLASS 361

Query: 298 VVIQKF 303
           VVIQKF
Sbjct: 362 VVIQKF 367


>AT4G04210.1 | Symbols: PUX4 | PUX4; protein binding |
           chr4:2030391-2031670 FORWARD
          Length = 303

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/308 (67%), Positives = 240/308 (77%), Gaps = 10/308 (3%)

Query: 1   MASRDKKPAKPSSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKG 60
           M+S+DKKP+KPSSSR GGIRTLSDLNRRSGP        PQEYYTGGEKSGMLVQDP+K 
Sbjct: 1   MSSKDKKPSKPSSSR-GGIRTLSDLNRRSGPDSDSDSDGPQEYYTGGEKSGMLVQDPSKK 59

Query: 61  NDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNIVF 120
           +DVD IFNQARQLGAVEGPL+               RLLSGE VP+  QQPE V+HNIVF
Sbjct: 60  DDVDEIFNQARQLGAVEGPLE---PPPSSRSFTGTGRLLSGENVPTGNQQPEPVVHNIVF 116

Query: 121 WTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPEPE 180
           W+NGFT++DGPLR+LDDPENASFLESIRKSECPKELEP DRR+ VHVNL+R++E+CPE +
Sbjct: 117 WSNGFTIDDGPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLMRKEEKCPERQ 176

Query: 181 KQRHVPFQGVGRTLGSSXXXXXXXX-----XXXXXLNTAPTPSMGLVVNETLPSTSIQLR 235
           K+R V FQGVGRTLG S                  + T P PS  LV++ET+P+TSIQLR
Sbjct: 177 KRR-VSFQGVGRTLGGSNEGSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETVPTTSIQLR 235

Query: 236 LADGTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLG 295
           LADGTR++A FN +HTVNDIR FI++SRPG + NYQLQ MGFPPK L+D TQTIEEAGL 
Sbjct: 236 LADGTRLVAKFNHHHTVNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLA 295

Query: 296 NSVVIQKF 303
           NSVV+QKF
Sbjct: 296 NSVVLQKF 303


>AT4G15410.1 | Symbols: PUX5 | PUX5 (Arabidopsis thaliana
           serine/threonine protein phosphatase 2A 55 kDa
           regulatory subunit B prime gamma); protein binding |
           chr4:8814868-8816596 FORWARD
          Length = 421

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/315 (51%), Positives = 204/315 (64%), Gaps = 17/315 (5%)

Query: 2   ASRDKKPAKPSSSRT-------GGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLV 54
           A  +K+   PS  R+       G IRT +DLNR              EYYTGG+KSGM+V
Sbjct: 111 AGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMV 170

Query: 55  QDPTKGNDVDAIFNQARQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEA- 113
           QDP K  DVD +F+QARQ  AV+ P++               RLLSGE V S+PQQ +  
Sbjct: 171 QDPKKVKDVDELFDQARQ-SAVDRPVE--PSRSASTSFTGAARLLSGEAVSSSPQQQQQE 227

Query: 114 ----VIHNIVFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNL 169
               ++H I FW NGFTVNDGPLR   DPENA+F+ SI +SECP ELEP D++  VHV+L
Sbjct: 228 QPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDL 287

Query: 170 IRRDEQCPEPEKQRHVPFQGVGRTLGSSXXXXXXXXXXXXX-LNTAPTPSMGLVVNETLP 228
           +RR E   EP K ++ PFQGVGRTLG+S              +N AP PS GLVV+   P
Sbjct: 288 VRRGENFTEPPKPKN-PFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAP 346

Query: 229 STSIQLRLADGTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQT 288
           +TSIQLRLADGTR+++ FN +HTV D+R FI+ASRPGG++ YQL  MGFPPK L++  QT
Sbjct: 347 TTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQT 406

Query: 289 IEEAGLGNSVVIQKF 303
           IE+AG+ N+VVIQKF
Sbjct: 407 IEQAGIANAVVIQKF 421


>AT3G21660.1 | Symbols:  | UBX domain-containing protein |
           chr3:7624495-7626654 REVERSE
          Length = 435

 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 107/193 (55%), Gaps = 25/193 (12%)

Query: 112 EAVIHNIVFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIR 171
           E V + +  W NGFTV+D P + LDDPENA+FLE +          PED +  V      
Sbjct: 267 EVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFLEYM----------PEDNKFGVPTTTRS 316

Query: 172 RDEQCPEPEKQRHVPFQGVGRTLGSSXXXXXXXXXXXXXLNTAPTPSMG-LVVNETLPST 230
                     Q H   Q +  +  +S             L T   PSM  LVV+   P+T
Sbjct: 317 TSCS-----SQTHQELQTLAGSESTSTEPP---------LTTTQPPSMSSLVVDPAAPTT 362

Query: 231 SIQLRLADGTRMIAHFNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIE 290
           SIQL LAD TR++  FN +HT+ DIR FI+ SRP G+++YQL +MG PP  LSD  QTIE
Sbjct: 363 SIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTIE 422

Query: 291 EAGLGNSVVIQKF 303
           +AG+ NSV++QKF
Sbjct: 423 KAGIANSVLVQKF 435



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 97  RLLSGETVPSA-PQQPEAVI-HNIVFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPK 154
           R +S ETV S   ++P+ V  H +  W+NGFTV+D  L+ LDDPENA+FLE I   E P+
Sbjct: 132 RSMSEETVSSELEEEPQKVFTHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPR 191

Query: 155 ELEPEDRRSSVHVNLIRRDEQ 175
           EL     +  V V +I R+E+
Sbjct: 192 EL----GQVRVQVKIISREEE 208