Jatropha Genome Database

JcCB0013521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013521.10 - phase: 0 
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   232   7e-62
AT2G19340.2 | Symbols:  | membrane protein, putative | chr2:8375...   223   6e-59
AT2G19340.1 | Symbols:  | membrane protein, putative | chr2:8374...   201   2e-52

>AT4G29870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: membrane protein, putative
           (TAIR:AT2G19340.2); Has 163 Blast hits to 163 proteins
           in 56 species: Archae - 0; Bacteria - 0; Metazoa - 127;
           Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
           10 (source: NCBI BLink). | chr4:14606012-14606530
           FORWARD
          Length = 172

 Score =  232 bits (592), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 135/166 (81%), Gaps = 3/166 (1%)

Query: 3   SQTL---TDPTSSSMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFM 59
           SQTL   +D   SS+DPIFHI++I+P+                    MTVF+L+LLTYF+
Sbjct: 7   SQTLATGSDENESSIDPIFHILRIIPFSFLRPPRLRLKLPSFTLPSPMTVFSLILLTYFL 66

Query: 60  VVSGIVYDVIVEPPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIV 119
           VVSG VYDVIVEPPGIGSTQDP TGS+RPVVF+ GRVNGQYIIEGLSSGFMFVLGG GI+
Sbjct: 67  VVSGFVYDVIVEPPGIGSTQDPITGSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGII 126

Query: 120 LMDLALDKNRAKSVKVSYATAGISSLIIAYVMSMLFIRIKIPGYLR 165
           ++DLALDKNRAKSVK SYATAG+SS++IAYVMSMLFIRIKIPGYLR
Sbjct: 127 MLDLALDKNRAKSVKASYATAGVSSIVIAYVMSMLFIRIKIPGYLR 172


>AT2G19340.2 | Symbols:  | membrane protein, putative |
           chr2:8375274-8375795 REVERSE
          Length = 173

 Score =  223 bits (567), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 127/154 (82%)

Query: 11  SSSMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFMVVSGIVYDVIV 70
            SSMDPIFH+++IVP+                    MTV+AL+LLTYF+VVSG VYDVIV
Sbjct: 19  QSSMDPIFHLLRIVPFSFLRPPRLRLKIPSFTLPSPMTVYALILLTYFLVVSGFVYDVIV 78

Query: 71  EPPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIVLMDLALDKNRA 130
           EPPGIGSTQDP TG+IRPVVF+ GRVNGQYIIEGLSSGFMFVLGG GIV++DLALDKN+A
Sbjct: 79  EPPGIGSTQDPTTGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKA 138

Query: 131 KSVKVSYATAGISSLIIAYVMSMLFIRIKIPGYL 164
           KSVK SYA AG+SS++IAYVMSMLFIRIKIPGYL
Sbjct: 139 KSVKASYAVAGVSSIVIAYVMSMLFIRIKIPGYL 172


>AT2G19340.1 | Symbols:  | membrane protein, putative |
           chr2:8374313-8375795 REVERSE
          Length = 200

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/141 (70%), Positives = 115/141 (81%)

Query: 12  SSMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFMVVSGIVYDVIVE 71
           SSMDPIFH+++IVP+                    MTV+AL+LLTYF+VVSG VYDVIVE
Sbjct: 20  SSMDPIFHLLRIVPFSFLRPPRLRLKIPSFTLPSPMTVYALILLTYFLVVSGFVYDVIVE 79

Query: 72  PPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIVLMDLALDKNRAK 131
           PPGIGSTQDP TG+IRPVVF+ GRVNGQYIIEGLSSGFMFVLGG GIV++DLALDKN+AK
Sbjct: 80  PPGIGSTQDPTTGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAK 139

Query: 132 SVKVSYATAGISSLIIAYVMS 152
           SVK SYA AG+SS++IAYVMS
Sbjct: 140 SVKASYAVAGVSSIVIAYVMS 160