Jatropha Genome Database

JcCB0013291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013291.10 + phase: 0 
         (111 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related |...   150   2e-37

>AT3G06610.1 | Symbols:  | DNA-binding enhancer protein-related |
           chr3:2060837-2061845 FORWARD
          Length = 115

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 85/110 (77%)

Query: 1   MEGADEGGIERVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQXXXXXXXXXXXXDWNAM 60
           MEGA+E G E  VDSKDLQQQSKA DKLTDRVEDRQLDS+RVQ            D NA 
Sbjct: 1   MEGAEEAGAEIAVDSKDLQQQSKAFDKLTDRVEDRQLDSSRVQSAMASIAASREADLNAK 60

Query: 61  RMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIQHLL 110
           R+REKELA+VKIN ADV+ I NELE++K VAERTLREHKGDAVAA + LL
Sbjct: 61  RLREKELASVKINPADVEFIVNELEIEKNVAERTLREHKGDAVAATRQLL 110