Jatropha Genome Database
- JcCB0013151.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0013151.20 - phase: 0
(221 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51060.1 | Symbols: STY1, SRS1 | STY1 (STYLISH 1); protein he... 166 1e-41
AT1G75520.1 | Symbols: SRS5 | SRS5 (SHI-RELATED SEQUENCE 5) | ch... 164 4e-41
AT5G66350.1 | Symbols: SHI | SHI (SHORT INTERNODES); protein bin... 161 3e-40
AT2G21400.1 | Symbols: SRS3 | SRS3 (SHI-RELATED SEQUENCE3) | chr... 156 9e-39
AT1G19790.2 | Symbols: SRS7 | SRS7 (SHI-RELATED SEQUENCE 7) | ch... 151 3e-37
AT1G19790.1 | Symbols: SRS7 | SRS7 (SHI-RELATED SEQUENCE 7) | ch... 151 3e-37
AT4G36260.1 | Symbols: STY2, SRS2 | STY2 (STYLISH 2); transcript... 149 2e-36
AT2G18120.1 | Symbols: SRS4 | SRS4 (SHI-RELATED SEQUENCE 4) | ch... 137 5e-33
AT5G12330.1 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1); ... 120 8e-28
AT5G12330.2 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1); ... 120 8e-28
AT3G54430.1 | Symbols: SRS6 | SRS6 (SHI-RELATED SEQUENCE 6) | ch... 99 2e-21
AT5G33210.1 | Symbols: SRS8 | SRS8 (SHI-RELATED SEQUENCE 8) | ch... 93 1e-19
AT5G12330.3 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1); ... 84 7e-17
>AT3G51060.1 | Symbols: STY1, SRS1 | STY1 (STYLISH 1); protein
heterodimerization/ transcription factor |
chr3:18964606-18966130 FORWARD
Length = 370
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 101/142 (71%), Gaps = 18/142 (12%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIA-VQQQNPHQQ 71
CQDCGNQAKK+C HMRCRTCCKS+GFEC THV+STW+PA +RR R +A VQ Q Q
Sbjct: 144 CQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQT--QL 201
Query: 72 PRTNSNPKR--------------LRLSPLTGLEVGNFPAEVNSIATFRCFRMSSIDEEGD 117
PR S PKR R+ +GLEVGNFPAEV+S A FRC R+SS+ E+G+
Sbjct: 202 PRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSV-EDGE 260
Query: 118 YQLAYQTSVGIGGHVFQGILYD 139
+ AYQT+V IGGH+F+GILYD
Sbjct: 261 EEFAYQTAVSIGGHIFKGILYD 282
>AT1G75520.1 | Symbols: SRS5 | SRS5 (SHI-RELATED SEQUENCE 5) |
chr1:28351779-28353179 REVERSE
Length = 346
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 128/251 (50%), Gaps = 53/251 (21%)
Query: 1 MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
+ RQGG+ CQDCGNQAKK+C HMRCRTCCKS+GF CQTHVKSTW+PA +RR R +
Sbjct: 117 VTRQGGM----NCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQ 172
Query: 61 IAVQQQNPHQQPRTNSNPKRLR----------------------------LSPLTGLEVG 92
+A Q + R N KRLR + +GLEV
Sbjct: 173 LASLQHHS-ASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVS 231
Query: 93 -NFPAEVNSIATFRCFRMSSIDEEGDYQ-LAYQTSVGIGGHVFQGILYDQGP-HQESFST 149
+ P EVNS A FRC R+SSI+E+ D Q AYQT+V IGGH+F+GILYDQGP HQ++
Sbjct: 232 QHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHL 291
Query: 150 QLLQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAEHSSSYPFPLNAF 209
LL T + + SS YP LN+F
Sbjct: 292 NLLAST-----------------ATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSF 334
Query: 210 TSGTQLFLHPK 220
+GT F P+
Sbjct: 335 IAGTPFFTPPR 345
>AT5G66350.1 | Symbols: SHI | SHI (SHORT INTERNODES); protein
binding / protein heterodimerization/ transcription
factor | chr5:26504714-26506143 REVERSE
Length = 331
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 108/164 (65%), Gaps = 20/164 (12%)
Query: 1 MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
MMR G GG CQDCGNQ+KK+C HMRCRTCCKS+G +C THVKSTW+PA +RR R
Sbjct: 108 MMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQ 167
Query: 61 IAVQQQNPHQQPRTNSNPKRLR----------------LSPLTGLEVGNFPAEVNSIATF 104
++ QQ Q S PKR R + +GLEVGNFP EV+S A F
Sbjct: 168 LSTGQQ---PQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVF 224
Query: 105 RCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQESFS 148
RC R+SS+D+E + + AY+T+V IGGHVF+G+LYDQGP + S S
Sbjct: 225 RCVRVSSVDDE-EEEYAYKTAVSIGGHVFKGVLYDQGPAERSSS 267
>AT2G21400.1 | Symbols: SRS3 | SRS3 (SHI-RELATED SEQUENCE3) |
chr2:9158390-9159541 FORWARD
Length = 174
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 101/139 (72%), Gaps = 16/139 (11%)
Query: 7 LLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQ 66
++ G +C+DCGNQAKK+CV+MRCRTCCKSK F CQTH+KSTW+PAYRR
Sbjct: 3 MIMGRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRR----------SH 52
Query: 67 NPHQ-QPRTNSNPKRLRLSPLTGLEVGNFPAEVNSIATFRCFRMSSIDEEGDYQLAYQTS 125
+ HQ QP + S PK +++ G+FPAE++S+A FRC ++SSID +G Q AYQT+
Sbjct: 53 HKHQSQPLSTSIPKGVQIHTTP----GHFPAELSSLADFRCVKVSSID-DGKEQYAYQTT 107
Query: 126 VGIGGHVFQGILYDQGPHQ 144
V IGGHVF+GIL+DQG H+
Sbjct: 108 VNIGGHVFRGILHDQGLHK 126
>AT1G19790.2 | Symbols: SRS7 | SRS7 (SHI-RELATED SEQUENCE 7) |
chr1:6838400-6839831 REVERSE
Length = 345
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 107/172 (62%), Gaps = 36/172 (20%)
Query: 1 MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
+ RQG + CQDCGNQAKK+C HMRCRTCCKS+GF+CQTHVKSTW+ A +RR R +
Sbjct: 111 VTRQGNM----NCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQ 166
Query: 61 IAVQQQNPHQQPRTNSNPK---------------------------RLRLSPLTGLEVGN 93
+AV P ++ R ++N + R+ + +GLE +
Sbjct: 167 LAVL---PAKRIR-DANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSH 222
Query: 94 FPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQE 145
P E++S A FRC R+SSID+E D + AYQT+V IGGHVF+GILYDQGP +
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDE-DEEYAYQTAVSIGGHVFKGILYDQGPSSD 273
>AT1G19790.1 | Symbols: SRS7 | SRS7 (SHI-RELATED SEQUENCE 7) |
chr1:6838400-6839831 REVERSE
Length = 345
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 107/172 (62%), Gaps = 36/172 (20%)
Query: 1 MMRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSN 60
+ RQG + CQDCGNQAKK+C HMRCRTCCKS+GF+CQTHVKSTW+ A +RR R +
Sbjct: 111 VTRQGNM----NCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQ 166
Query: 61 IAVQQQNPHQQPRTNSNPK---------------------------RLRLSPLTGLEVGN 93
+AV P ++ R ++N + R+ + +GLE +
Sbjct: 167 LAVL---PAKRIR-DANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSH 222
Query: 94 FPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQE 145
P E++S A FRC R+SSID+E D + AYQT+V IGGHVF+GILYDQGP +
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDE-DEEYAYQTAVSIGGHVFKGILYDQGPSSD 273
>AT4G36260.1 | Symbols: STY2, SRS2 | STY2 (STYLISH 2); transcription
factor | chr4:17155705-17157006 REVERSE
Length = 322
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 94/152 (61%), Gaps = 22/152 (14%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNPHQQP 72
C+DCGNQAKK+C HMRCRTCCKS+GF+C THV+STWIP RRR R + +
Sbjct: 94 CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGS 153
Query: 73 RTNSN-------PKRLRLSPL-------------TGLEVG--NFPAEVNSIATFRCFRMS 110
+ PKR R L GLE+G +FP EV+S A FRC +MS
Sbjct: 154 GSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMS 213
Query: 111 SIDEEGDYQLAYQTSVGIGGHVFQGILYDQGP 142
+D+ GD Q AYQT+V IGGH+F+GILYDQGP
Sbjct: 214 GVDDGGDGQYAYQTTVNIGGHLFKGILYDQGP 245
>AT2G18120.1 | Symbols: SRS4 | SRS4 (SHI-RELATED SEQUENCE 4) |
chr2:7876722-7877681 REVERSE
Length = 222
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNPHQQP 72
CQ+CGNQAKK C H RCRTCCKS G C THV+STWIP +RR R + NP
Sbjct: 72 CQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQQLQTPTSNPTGGS 131
Query: 73 RTNSNPKRLRLSPL---TGLEVGN--FPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSVG 127
+ + +GLE+G FP EV+S A FRC RMS D +G+ Q AYQT+VG
Sbjct: 132 GRVGKYRDINQHATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTD-DGEGQYAYQTTVG 190
Query: 128 IGGHVFQGILYDQGPHQESF-STQLLQD 154
I GH+F+GILY+QGP +S STQ ++
Sbjct: 191 IAGHLFKGILYNQGPENKSMRSTQFYEN 218
>AT5G12330.1 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1);
protein homodimerization | chr5:3987677-3989074 REVERSE
Length = 320
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 35/161 (21%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNP---- 68
CQDCGNQAKKEC RCRTCCKS+GF+C THVKSTW+ A RRR R + NP
Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRER--QVMPTGANPTAGS 169
Query: 69 -------HQQPR------------------TNSNPKRLRLSPLT---GLEVGNFPAEVNS 100
++PR +N+ P+ S G +P +V +
Sbjct: 170 SLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRA 229
Query: 101 IATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
A F+C R++++ E+GD + AYQ V IGGHVF+G LYDQG
Sbjct: 230 AAVFKCVRVTAV-EDGDDEYAYQAVVKIGGHVFKGFLYDQG 269
>AT5G12330.2 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1);
protein homodimerization | chr5:3987677-3989074 REVERSE
Length = 320
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 35/161 (21%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQNP---- 68
CQDCGNQAKKEC RCRTCCKS+GF+C THVKSTW+ A RRR R + NP
Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRER--QVMPTGANPTAGS 169
Query: 69 -------HQQPR------------------TNSNPKRLRLSPLT---GLEVGNFPAEVNS 100
++PR +N+ P+ S G +P +V +
Sbjct: 170 SLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRA 229
Query: 101 IATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
A F+C R++++ E+GD + AYQ V IGGHVF+G LYDQG
Sbjct: 230 AAVFKCVRVTAV-EDGDDEYAYQAVVKIGGHVFKGFLYDQG 269
>AT3G54430.1 | Symbols: SRS6 | SRS6 (SHI-RELATED SEQUENCE 6) |
chr3:20147224-20147851 REVERSE
Length = 183
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 18/156 (11%)
Query: 2 MRQGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRL----- 56
+ +G C+DCGN+AKKEC+ RCRTCCKS+G+ C THVKSTWIP+ R
Sbjct: 30 VEDNNTVGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSSPS 89
Query: 57 -RPSNIAVQQQ---NPHQQPRTNSNPKRLRLSPLTGLEVGNFPAEVNSIATFRCFRMSSI 112
R + + +Q N P T S +R G G P ++ + A F+ R+++I
Sbjct: 90 ERKKKLKIDKQSSPNVSLLPTTTSRQER-------GFREG-LPGKIEAPAVFKRTRVTAI 141
Query: 113 DEEGDYQLAYQTSVGIGGHVFQGILYDQG-PHQESF 147
++ YQ +V I GH+F+G L+ G H ++F
Sbjct: 142 SNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAF 177
>AT5G33210.1 | Symbols: SRS8 | SRS8 (SHI-RELATED SEQUENCE 8) |
chr5:12465057-12465713 REVERSE
Length = 173
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 60/94 (63%), Gaps = 12/94 (12%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIA-VQQQNPHQQ 71
CQD GNQAKK+C HMRCRTCCKS+GFEC THV+STW+PA +RR R +A VQ Q Q
Sbjct: 52 CQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRERQQQLATVQPQT--QL 109
Query: 72 PRTNSNPKRLRLSPLTGLEVGNFPAEVNSIATFR 105
PR S PKR R N PA +S+ R
Sbjct: 110 PRGESVPKRHR---------ENLPATSSSLVCTR 134
>AT5G12330.3 | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1);
protein homodimerization | chr5:3988394-3989074 REVERSE
Length = 226
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 38/45 (84%)
Query: 13 CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLR 57
CQDCGNQAKKEC RCRTCCKS+GF+C THVKSTW+ A RRR R
Sbjct: 112 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRER 156