Jatropha Genome Database

JcCB0013151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.10 - phase: 1 /partial
         (288 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ...   314   4e-86
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ...    62   4e-10
AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de...    55   7e-08

>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
           putative | chr2:7126536-7130665 REVERSE
          Length = 847

 Score =  314 bits (805), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 172/196 (87%), Gaps = 1/196 (0%)

Query: 93  TPTFVWGTNISVEDVKERFQMFLKHYRDNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDV 152
           TPTFVWGTNISV+DVK   +MF+KH+R+  ++ S+++F EGKY+ +IRKV+E+EGE +DV
Sbjct: 119 TPTFVWGTNISVQDVKSAIEMFVKHFREAREN-SDDLFREGKYMVSIRKVIEIEGEWIDV 177

Query: 153 DAHDVFDYDSDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPLFEKHVQVRIYNLKTSTTMR 212
           DA DVFDYD DLY KMVRYPLEVLAIFDIVLMD V  ++ LFEKHVQVRI+NL+TST+MR
Sbjct: 178 DAFDVFDYDPDLYNKMVRYPLEVLAIFDIVLMDIVSTINRLFEKHVQVRIFNLRTSTSMR 237

Query: 213 NLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQ 272
           NLNPSDIEKM+SLKGMIIR SSIIPEIREA+FRCLVCG  + P +V+RG+I+EP  CLKQ
Sbjct: 238 NLNPSDIEKMISLKGMIIRSSSIIPEIREAVFRCLVCGYFSDPIIVDRGKISEPPTCLKQ 297

Query: 273 ECLAKNSMTLVHNRCR 288
           EC+ KNSMTLVHNRCR
Sbjct: 298 ECMTKNSMTLVHNRCR 313


>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
           protein / MCM family protein | chr5:18006431-18010542
           REVERSE
          Length = 831

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 102 ISVEDVKERFQMFLKHYRDNSQSLSNEIFEEGKYVKAIRKVLEVEGEGLDVDAHDVFDYD 161
           I VE+V   F  FLK +R ++     E++ E + ++AIR     E   + +D   V  ++
Sbjct: 14  IQVENV---FLEFLKSFRLDANK--PELYYEAE-IEAIRGG---ESTMMYIDFSHVMGFN 64

Query: 162 SDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPLF------EKHVQVRIYNLKTSTTMRNLN 215
             L   +    L            FV  M+P F       K + V  YNL  +  +R L 
Sbjct: 65  DALQKAIADEYLRFEPYLRNACKRFVIEMNPSFISDDTPNKDINVSFYNLPFTKRLRELT 124

Query: 216 PSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECL 275
            ++I K+VS+ G++ R S + PE+    F+CL CG+V    + ++ +  +PT+C+   CL
Sbjct: 125 TAEIGKLVSVTGVVTRTSEVRPELLYGTFKCLDCGSVI-KNVEQQFKYTQPTICVSPTCL 183

Query: 276 AKNSMTLVHNRCR 288
            +    L+    +
Sbjct: 184 NRARWALLRQESK 196


>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
           DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
          Length = 936

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 134 KYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPL 193
           +YV+ I +++      L++D  +      ++   +   P  VL + + V    +  + P 
Sbjct: 240 EYVRLINEMVSANKCSLEIDYKEFIHVHPNIAIWLADAPQPVLEVMEEVSEKVIFDLHPN 299

Query: 194 FEK---HVQVRIYNLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCG 250
           ++     + VR+ NL  +  +RN+    +  M+ + G++ R S + P++++  + C  CG
Sbjct: 300 YKNIHTKIYVRVTNLPVNDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCG 359

Query: 251 NVAGPFLVERGRINEPTVCLKQECLAKNSMTL 282
            V GPF   +   +E  V    EC +K   T+
Sbjct: 360 AVLGPFF--QNSYSEVKVGSCSECQSKGPFTV 389