Jatropha Genome Database

JcCB0012961.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.30 - phase: 0 /pseudo/partial
         (99 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66910.1 | Symbols:  | protein kinase, putative | chr1:249616...    46   5e-06
AT1G66920.1 | Symbols:  | serine/threonine protein kinase, putat...    46   5e-06

>AT1G66910.1 | Symbols:  | protein kinase, putative |
           chr1:24961634-24963941 REVERSE
          Length = 666

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 26/35 (74%)

Query: 23  NLLGFINEVASISRTSHVNIVTLSGFCSRVLKEHL 57
           N   FINEVAS+S+TSHVNIVTL GFCS   K  +
Sbjct: 384 NGEDFINEVASMSQTSHVNIVTLLGFCSEGYKRAI 418


>AT1G66920.1 | Symbols:  | serine/threonine protein kinase, putative
           | chr1:24965410-24967432 REVERSE
          Length = 609

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 25/32 (78%)

Query: 23  NLLGFINEVASISRTSHVNIVTLSGFCSRVLK 54
           N   FINEVAS+S+TSHVNIVTL GFCS   K
Sbjct: 336 NGEDFINEVASMSQTSHVNIVTLLGFCSEGYK 367