Jatropha Genome Database

JcCB0012061.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012061.30 - phase: 2 /partial
         (134 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24190.1 | Symbols: SHD, HSP90.7 | SHD (SHEPHERD); ATP bindin...    77   4e-15
AT4G24190.2 | Symbols: SHD | SHD (SHEPHERD); ATP binding / unfol...    77   4e-15

>AT4G24190.1 | Symbols: SHD, HSP90.7 | SHD (SHEPHERD); ATP binding /
           unfolded protein binding | chr4:12551902-12555851
           REVERSE
          Length = 823

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 2   VDNDPDEATDNDMKGIE-DAYVDKKKGEYAKFWNELGESIKLNIMEDATNRNILAKFLKF 60
            + DPDE  D++ K +E     D+KKG+Y KFWNE G+S+KL I+EDA NRN LAK L+F
Sbjct: 483 AEEDPDEIHDDEKKDVEKSGENDEKKGQYTKFWNEFGKSVKLGIIEDAANRNRLAKLLRF 542

Query: 61  ERIKSDA 67
           E  KSD 
Sbjct: 543 ETTKSDG 549


>AT4G24190.2 | Symbols: SHD | SHD (SHEPHERD); ATP binding / unfolded
           protein binding | chr4:12551902-12555851 REVERSE
          Length = 823

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 2   VDNDPDEATDNDMKGIE-DAYVDKKKGEYAKFWNELGESIKLNIMEDATNRNILAKFLKF 60
            + DPDE  D++ K +E     D+KKG+Y KFWNE G+S+KL I+EDA NRN LAK L+F
Sbjct: 483 AEEDPDEIHDDEKKDVEKSGENDEKKGQYTKFWNEFGKSVKLGIIEDAANRNRLAKLLRF 542

Query: 61  ERIKSDA 67
           E  KSD 
Sbjct: 543 ETTKSDG 549