Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.40 + phase: 0 
         (132 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12260.1 | Symbols:  | complex 1 family protein / LVR family ...   205   5e-54

>AT3G12260.1 | Symbols:  | complex 1 family protein / LVR family
           protein | chr3:3909252-3910337 REVERSE
          Length = 133

 Score =  205 bits (522), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 114/130 (87%), Gaps = 1/130 (0%)

Query: 3   FTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQIR 62
           F LR + VPPNSA+L EAR RVFDFFR ACRSIPTIMDIYNLQDVV  S+LR +I++QIR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGLVQDLDSKDQGMSDF 122
            N+++T+PKVID+L+FKGMEEL +IV+HAKQRHHIIGQYVVG+ GLVQ+  +KDQG +DF
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVGE-GLVQNTGNKDQGKTDF 123

Query: 123 LKNFYKSNYY 132
           LKNFY SNY+
Sbjct: 124 LKNFYTSNYF 133