Jatropha Genome Database

JcCB0011311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011311.10 + phase: 0 /pseudo/partial
         (475 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative / g...   744   0.0  
AT2G16200.1 | Symbols:  | protein binding / structural molecule ...   106   4e-23

>AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative |
           chr4:16471956-16476795 FORWARD
          Length = 886

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/454 (78%), Positives = 397/454 (87%), Gaps = 1/454 (0%)

Query: 22  PEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 81
           P+AKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGP TSDPSKYIRYIYNRVHLENATVR
Sbjct: 434 PDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPNTSDPSKYIRYIYNRVHLENATVR 493

Query: 82  AAAVSTLAQFGALVDTLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEVVETDKDV 141
           AAAVSTLA+FG +V++LKPRI VLL+RC++DSDDEVRDRATLYL+ LGGDG  V+TDK+ 
Sbjct: 494 AAAVSTLAKFGFMVESLKPRITVLLKRCIYDSDDEVRDRATLYLSVLGGDG-TVDTDKES 552

Query: 142 QAFLFGPLDIPLFNLETSLKNYEPSEEPFDIHSVPKEVKSQPLAEKKAPGKKPTGLGSPP 201
           + FLFG L++PL N+ETSLKNYEPSEE FDI+SVPKEVKSQPLAEKKA GKKPTGLG+PP
Sbjct: 553 KDFLFGSLEVPLVNMETSLKNYEPSEEAFDINSVPKEVKSQPLAEKKAQGKKPTGLGAPP 612

Query: 202 AGPPSTVDAYEKLISSIPEFSNFGKLFKSSAPVELTEAETEYAVNAVKHIFDGHVVFQYN 261
           A P S  D YE+L+SSIPEF+ FGKLFKSS PVELTEAETEYAVN VKHIFD HVVFQYN
Sbjct: 613 AAPASGFDGYERLLSSIPEFAAFGKLFKSSLPVELTEAETEYAVNVVKHIFDSHVVFQYN 672

Query: 262 CTNTIPEQLLENVMVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGKF 321
           CTNTIPEQLLE V VIVD            K L SLPYDSPGQ FV FEKP GVPAVGKF
Sbjct: 673 CTNTIPEQLLERVNVIVDASEAEEFSEVTSKALNSLPYDSPGQAFVVFEKPAGVPAVGKF 732

Query: 322 SNMLRFIVKEVDPTTGEADEDGVEDEYQLEELEVVAADYMMKVGVSNFRNAWESMGPDCE 381
           SN L F+VKEVDP+TGEA++DGVEDEYQLE+LEVVA DYM+KVGVSNFRNAWESM  + E
Sbjct: 733 SNTLTFVVKEVDPSTGEAEDDGVEDEYQLEDLEVVAGDYMVKVGVSNFRNAWESMDEEDE 792

Query: 382 RVDEYGLGPRESLSEAVSAVINLLGMQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVRL 441
           RVDEYGLG RESL EAV AV++LLGMQ CEGTE +  N+RSHTCLLSGV+IGNV+VLVR 
Sbjct: 793 RVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHTCLLSGVYIGNVKVLVRA 852

Query: 442 QFGIDGARDVAMKLAVRSEDESVSDAIHEIVASG 475
           QFG+D ++D+AMKL VR+ED SV++AIHEIVASG
Sbjct: 853 QFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVASG 886


>AT2G16200.1 | Symbols:  | protein binding / structural molecule |
           chr2:7024766-7025104 FORWARD
          Length = 69

 Score =  106 bits (264), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 61/69 (88%)

Query: 407 MQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVRLQFGIDGARDVAMKLAVRSEDESVSD 466
           MQ C+GTE VASN+RSHTCL SG++IGNV+VLV+ QFG+D ++++ MKLAVR+ED SVSD
Sbjct: 1   MQSCKGTETVASNARSHTCLPSGLYIGNVKVLVKAQFGMDSSKEIVMKLAVRAEDPSVSD 60

Query: 467 AIHEIVASG 475
           AIH +VA+G
Sbjct: 61  AIHALVANG 69