Jatropha Genome Database

JcCB0011301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011301.20 + phase: 0 
         (108 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26680.2 | Symbols:  | endonuclease, putative | chr5:9311882-...   167   1e-42
AT5G26680.1 | Symbols:  | endonuclease, putative | chr5:9311882-...   166   2e-42
AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSI...    52   9e-08

>AT5G26680.2 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 383

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/84 (91%), Positives = 84/84 (100%)

Query: 1   MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
           MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTG+EMLTNEAGEVTSHLQGMFNRTIRLLE
Sbjct: 18  MKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLLE 77

Query: 61  SGMKPVYVFDGQPPDLKKQELAKR 84
           +G+KPVYVFDG+PP+LK+QELAKR
Sbjct: 78  AGIKPVYVFDGKPPELKRQELAKR 101


>AT5G26680.1 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 453

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/84 (91%), Positives = 84/84 (100%)

Query: 1   MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
           MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTG+EMLTNEAGEVTSHLQGMFNRTIRLLE
Sbjct: 18  MKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLLE 77

Query: 61  SGMKPVYVFDGQPPDLKKQELAKR 84
           +G+KPVYVFDG+PP+LK+QELAKR
Sbjct: 78  AGIKPVYVFDGKPPELKRQELAKR 101


>AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET
          HYPERSENSITIVE 3); DNA binding / catalytic/
          endonuclease/ nuclease/ single-stranded DNA binding |
          chr3:10424321-10431178 FORWARD
          Length = 1479

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 7  ESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLESGMKPV 66
          E+   +++AIDAS+ + QF+  +     +M+ N      +HL G F R  +LL    KP+
Sbjct: 20 ETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN------AHLIGFFRRICKLLFLRTKPI 73

Query: 67 YVFDGQPPDLKKQELAKR 84
          +VFDG  P LK++ +  R
Sbjct: 74 FVFDGATPALKRRTVIAR 91