Jatropha Genome Database
- JcCB0011271.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0011271.10 - phase: 0
(506 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 229 3e-60
AT2G03470.2 | Symbols: | myb family transcription factor / ELM2... 214 1e-55
AT2G03470.1 | Symbols: | myb family transcription factor / ELM2... 210 1e-54
AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1:... 200 2e-51
AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 101 1e-21
AT5G04110.1 | Symbols: | DNA topoisomerase II family protein | ... 100 3e-21
AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 70 3e-12
>AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: myb family
transcription factor / ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 82 Blast hits to 82 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 4; Plants - 78; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:9185620-9187213 FORWARD
Length = 493
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 175/522 (33%), Positives = 241/522 (46%), Gaps = 47/522 (9%)
Query: 1 MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVA-SLTPCLPGECGLTENAIE 59
M KRPF DE+ + + KH RQ+DYN++ F E P T E L ++ +
Sbjct: 1 MGFKRPFEDEKFHELPLKHSRQLDYNDKSTQFEEVSPHHAGFQKTVATVNEGNLCKS--Q 58
Query: 60 GHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEYFS 119
G E D+ +++ + PG + A Y + +YF
Sbjct: 59 GGESSEGDMF-------DEESNYVYPGHDMDDTFTWDTQGCGG---RDATYSPHSGKYFE 108
Query: 120 PQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPD 179
P R A E Y LLL +K +PIG HQA+IPEW
Sbjct: 109 LDIPPRVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQ---- 164
Query: 180 TNLLLERKDENRLMGTCVIPMPEFGLAAK----VGNVRIDCNCLEKGSIVCVKQHIVEAR 235
N + D +L GT VIPMP A VG R C C ++ S+ CV QHI EAR
Sbjct: 165 -NHISGCADGEKLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAR 223
Query: 236 ENLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFP 295
E L + G E F++LG CEMGE+ A KWS+ + QLF EVV+SNP +LG+NFW L + F
Sbjct: 224 EELVKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFC 283
Query: 296 SRSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQESDDYGDSKLVTXXXXXXXX 355
SR++K+I+S+YFNVF+LRRRA QNR +++ DSD+DEW YG S
Sbjct: 284 SRTQKEIVSFYFNVFVLRRRAIQNRAFILDI-DSDDDEWHGC--YGGSSGTRYVEEDEED 340
Query: 356 XXXPIPQEDCT-------HDQSWKDDLHVCDEGAVDYDCDDNEKSDFPYDRYIMNDLGTC 408
P T H++ +D H ++ + D D E YD + M+
Sbjct: 341 SAIESPLHQGTKKVYPLHHEEGEEDVSHSSND---EDDDDTKEGGTGLYDEHKMSSTVEY 397
Query: 409 PSASLDYGGSK--PKDDSCASSDTGGFSQGTQLKAENDDHWPCSVDGLSYGSGQDNN--C 464
G + +DDSC S + ++ AE D+ +V G +D N
Sbjct: 398 MDRFSGNNGERLNVEDDSCTSFE---LARNAVNCAEKDE----TVPGEQQKKLKDCNDPI 450
Query: 465 DIRVWDAGY-LVCPKGNVDLLPTCSMIEEVFGKESWNCKARD 505
D +VWDA L P DL PT ++EE+FG W KAR+
Sbjct: 451 DTKVWDASRCLNVPTNGKDLQPTRRIMEEIFGNGCWENKARN 492
>AT2G03470.2 | Symbols: | myb family transcription factor / ELM2
domain-containing protein | chr2:1045694-1047130 REVERSE
Length = 449
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 184/338 (54%), Gaps = 44/338 (13%)
Query: 1 MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASL---TPCLPGECGLTENA 57
M LKRP+ EE+ ++KH RQ+ Y N F E +P AS+ T L GL EN
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH-NQFDEAIPYHHASMEKKTNVLEDLIGLCENP 59
Query: 58 IEGHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEY 117
++ D ++D ++ V +S +++ S +
Sbjct: 60 TWTNDANHVDKGFETTGLCQEDSQSGVTTQS-----------------DLSHQSSGSDFT 102
Query: 118 FSPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMC 177
+ P ED+Y+ L+ PPRK + +GSNHQADIPE+ + +
Sbjct: 103 WKPV---------EDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDL- 152
Query: 178 PDTNLLLERKDENRLMGTCVIPMPEFGLAAKVGNVRIDCNCLEKGSIVCVKQHIVEAREN 237
E +LM CVIPM + L G R +C CL+KGSI CV++HI+EARE+
Sbjct: 153 -----------EGKLMRKCVIPMSDSDLCG-TGQGRKECLCLDKGSIRCVRRHIIEARES 200
Query: 238 LKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSR 297
L +G ERF +LG CEMGE+VA W+E EE LF +VV+SNP S G++FW+ L FPSR
Sbjct: 201 LVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSR 260
Query: 298 SKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQ 335
+ K+++SYYFNVF+LRRR QNR +++V DSD+DEWQ
Sbjct: 261 TMKELVSYYFNVFILRRRGIQNRFKALDV-DSDDDEWQ 297
>AT2G03470.1 | Symbols: | myb family transcription factor / ELM2
domain-containing protein | chr2:1045694-1047130 REVERSE
Length = 450
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 183/339 (53%), Gaps = 45/339 (13%)
Query: 1 MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTP----CLPGECGLTEN 56
M LKRP+ EE+ ++KH RQ+ Y N F E +P AS+ + GL EN
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH-NQFDEAIPYHHASMEKKTNVLVEDLIGLCEN 59
Query: 57 AIEGHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPE 116
++ D ++D ++ V +S +++ S +
Sbjct: 60 PTWTNDANHVDKGFETTGLCQEDSQSGVTTQS-----------------DLSHQSSGSDF 102
Query: 117 YFSPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXM 176
+ P ED+Y+ L+ PPRK + +GSNHQADIPE+ + +
Sbjct: 103 TWKPV---------EDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDL 153
Query: 177 CPDTNLLLERKDENRLMGTCVIPMPEFGLAAKVGNVRIDCNCLEKGSIVCVKQHIVEARE 236
E +LM CVIPM + L G R +C CL+KGSI CV++HI+EARE
Sbjct: 154 ------------EGKLMRKCVIPMSDSDLCG-TGQGRKECLCLDKGSIRCVRRHIIEARE 200
Query: 237 NLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPS 296
+L +G ERF +LG CEMGE+VA W+E EE LF +VV+SNP S G++FW+ L FPS
Sbjct: 201 SLVETIGYERFMELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPS 260
Query: 297 RSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQ 335
R+ K+++SYYFNVF+LRRR QNR +++V DSD+DEWQ
Sbjct: 261 RTMKELVSYYFNVFILRRRGIQNRFKALDV-DSDDDEWQ 298
>AT1G13880.1 | Symbols: | ELM2 domain-containing protein |
chr1:4749603-4750967 FORWARD
Length = 424
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 181/336 (53%), Gaps = 33/336 (9%)
Query: 1 MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLPGECGLTENAIEG 60
M KR F E++ ++ K+ RQ+ Y N+L E VP L+ PG G + + G
Sbjct: 1 MGFKRTFDAEDVQELNVKNGRQISYCNKLAKLDEGVP---YRLSLEKPGVVGYDISDLYG 57
Query: 61 HERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEYFSP 120
+ + +V+K ET P + A + S PE P
Sbjct: 58 Y---------KCEDNVDKGFETNAPFSWITTGLSEEDSQSGATIQSTISHES--PESDIP 106
Query: 121 QRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDT 180
RP + ED Y + PRK +PIGS++QADIPE D
Sbjct: 107 WRPV--CSGEEDGYWCPI--SPRKTVPIGSDYQADIPE-------------CVKEEANDQ 149
Query: 181 NLLLERKDENRLMGTCVIPMPEFGL-AAKVGNVRIDCNCLEKGSIVCVKQHIVEARENLK 239
+ DE ++ G CVIPMP+ K+G R +C CL+KGSI CV+QHI+E RE+L
Sbjct: 150 SGQGVGYDEEQVTGKCVIPMPDCETEVCKIGKGRKECICLDKGSIRCVQQHIMENREDLF 209
Query: 240 RILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSK 299
+G +R +G CEMGE+VA + +E EE LF E+V+SNP S+ ++FW+ L S FPSR+
Sbjct: 210 ATIGYDRCLDIGLCEMGEEVAARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTM 269
Query: 300 KDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQ 335
K+I+SYYFNVF+LRRRA QNR S++V DSD+DEWQ
Sbjct: 270 KEIVSYYFNVFILRRRAIQNRSKSLDV-DSDDDEWQ 304
>AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein |
chr4:6938717-6940539 FORWARD
Length = 573
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 142 PRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMP 201
PR+ I +G HQA + EW P+ + L++ N L
Sbjct: 370 PRRCIKVGHQHQAQVDEWTESGVDSDSKWLGTRIWPPENSEALDQTLGNDL--------- 420
Query: 202 EFGLAAKVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGEQVA 260
VG R D C+C G + C + HI E R LKR LG + F F +MGE+V
Sbjct: 421 -------VGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFF-HWRFNQMGEEVC 472
Query: 261 EKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRRRAEQNR 320
+W+E EE+ F++++ ++P S FW + FP + +++++SYYFNVF++ RR QNR
Sbjct: 473 LRWTEEEEKRFKDMIIADPQS----FWTNAAKNFPKKKREELVSYYFNVFLINRRRYQNR 528
Query: 321 CNSMNVDDSD 330
++D D
Sbjct: 529 VTPKSIDSDD 538
>AT5G04110.1 | Symbols: | DNA topoisomerase II family protein |
chr5:1110757-1114112 REVERSE
Length = 546
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 143 RKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIP--- 199
R AIPIG QA+IP W D+N L R +GT V P
Sbjct: 358 RPAIPIGPRFQAEIPVW-----IAPTKKGKFYGSPGDSNTL-------RWLGTGVWPTYS 405
Query: 200 MPEFGLAAKVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGEQ 258
+ + + KVG R D C+C S C+K+H EA+E L++ + + F F +MGE+
Sbjct: 406 LKKTVHSKKVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEINRA-FSTWEFDQMGEE 464
Query: 259 VAEK-WSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRR 314
+ K W+ EE+ F +V NP S FWE S+ FP +SKKD++SYY+NVF+++R
Sbjct: 465 IVLKSWTAKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLIKR 521
>AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein |
chr2:18935684-18937807 REVERSE
Length = 562
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 33/194 (17%)
Query: 148 IGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPEFGLAA 207
+GS QA +PEW + P+++ ++ +GT + P+ + A
Sbjct: 362 VGSKFQAKVPEWT--------------GITPESD--------SKWLGTRIWPLTKEQTKA 399
Query: 208 -------KVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGEQV 259
++G R D C C GSI CVK HI R+ LK LG F F MGE
Sbjct: 400 NLLIERDRIGKGRQDPCGCHNPGSIECVKFHITAKRDKLKLELGPA-FYMWCFDVMGECT 458
Query: 260 AEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRRRAEQN 319
+ W++ E + + ++ S+P SL F + PS+S+ I+SY++NV +L+ RA Q+
Sbjct: 459 LQYWTDLELKKIKSLM-SSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQS 517
Query: 320 RCNSMNVDDSDNDE 333
R ++ DSD D+
Sbjct: 518 RITPHDI-DSDTDQ 530