Jatropha Genome Database

JcCB0010841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.20 - phase: 0 /partial
         (181 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71810.1 | Symbols:  | ABC1 family protein | chr1:27002602-27...   119   1e-27

>AT1G71810.1 | Symbols:  | ABC1 family protein |
           chr1:27002602-27007964 REVERSE
          Length = 692

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 100/178 (56%), Gaps = 10/178 (5%)

Query: 5   RTERALVKRQIEDTGSRVAIKEILSFTLTEKGSFVKEILLQEVAKGLDALGLATLDFLTX 64
           RTE ALV++ +  T S +A+K++L+FT TE+GSFV+EILL+E AKGLDA GLATLD  T 
Sbjct: 524 RTETALVQKPVVGTESNIAMKQMLAFTFTEQGSFVREILLREFAKGLDAYGLATLDSFT- 582

Query: 65  XXXXXXXXXXXXXXXXMTEEDIMNXXXXXXXXXXXSGSQKNGSSIEEVKGPYRNPNIFLE 124
                           +TEED+ N           SG QK  S ++ V   Y      L+
Sbjct: 583 -------FSGSGPSSSLTEEDMTNLRTFYRLISLFSGMQKAKSQVKAVSK-YGEALTPLD 634

Query: 125 EVS-DFYQLESVQDILPVLSVIXXXXXXXXXXXXXXXADIAGRLISRATARTIRRMFL 181
           E S   YQL S Q++LP+LS++                D+ GRL++RA ARTIRR+FL
Sbjct: 635 EASLVMYQLPSAQEMLPILSILPELPQESQQRLLQLPGDLVGRLVTRAFARTIRRIFL 692