Jatropha Genome Database

JcCB0010841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.10 + phase: 0 /partial
         (285 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21940.4 | Symbols:  | shikimate kinase, putative | chr2:9351...   164   4e-41
AT2G21940.5 | Symbols:  | shikimate kinase, putative | chr2:9351...   164   4e-41
AT2G21940.2 | Symbols:  | shikimate kinase, putative | chr2:9351...   164   4e-41
AT2G21940.1 | Symbols:  | shikimate kinase, putative | chr2:9351...   164   4e-41
AT4G39540.2 | Symbols:  | shikimate kinase family protein | chr4...   155   2e-38
AT4G39540.1 | Symbols:  | shikimate kinase family protein | chr4...   155   2e-38
AT2G21940.3 | Symbols:  | shikimate kinase, putative | chr2:9351...   143   1e-34
AT3G26900.3 | Symbols:  | shikimate kinase family protein | chr3...    68   8e-12
AT3G26900.2 | Symbols:  | shikimate kinase family protein | chr3...    68   8e-12
AT3G26900.1 | Symbols:  | shikimate kinase family protein | chr3...    68   8e-12

>AT2G21940.4 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 304

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 124/205 (60%), Gaps = 8/205 (3%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           DE+ +LK K +EV   LNG S++LV            ++S+ LGYTF D      C D  
Sbjct: 86  DED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD------C-DTL 137

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           +EQA  G SVA I+  +GENFFR  E++AL KL                   NWKYM +G
Sbjct: 138 IEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKG 197

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I+++LDVPL+ LA RIAA+GTDSRPLLH +SGD+Y  AF  L A+   R +AY++A+  V
Sbjct: 198 ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 257

Query: 231 SISHLADNLGAQDVSDLEPATIALE 255
           S+ ++A   G ++VSDL P  IA+E
Sbjct: 258 SLENIAAKRGYKNVSDLTPTEIAIE 282


>AT2G21940.5 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 124/205 (60%), Gaps = 8/205 (3%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           DE+ +LK K +EV   LNG S++LV            ++S+ LGYTF D      C D  
Sbjct: 85  DED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD------C-DTL 136

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           +EQA  G SVA I+  +GENFFR  E++AL KL                   NWKYM +G
Sbjct: 137 IEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKG 196

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I+++LDVPL+ LA RIAA+GTDSRPLLH +SGD+Y  AF  L A+   R +AY++A+  V
Sbjct: 197 ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 256

Query: 231 SISHLADNLGAQDVSDLEPATIALE 255
           S+ ++A   G ++VSDL P  IA+E
Sbjct: 257 SLENIAAKRGYKNVSDLTPTEIAIE 281


>AT2G21940.2 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 124/205 (60%), Gaps = 8/205 (3%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           DE+ +LK K +EV   LNG S++LV            ++S+ LGYTF D      C D  
Sbjct: 85  DED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD------C-DTL 136

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           +EQA  G SVA I+  +GENFFR  E++AL KL                   NWKYM +G
Sbjct: 137 IEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKG 196

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I+++LDVPL+ LA RIAA+GTDSRPLLH +SGD+Y  AF  L A+   R +AY++A+  V
Sbjct: 197 ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 256

Query: 231 SISHLADNLGAQDVSDLEPATIALE 255
           S+ ++A   G ++VSDL P  IA+E
Sbjct: 257 SLENIAAKRGYKNVSDLTPTEIAIE 281


>AT2G21940.1 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 124/205 (60%), Gaps = 8/205 (3%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           DE+ +LK K +EV   LNG S++LV            ++S+ LGYTF D      C D  
Sbjct: 85  DED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD------C-DTL 136

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           +EQA  G SVA I+  +GENFFR  E++AL KL                   NWKYM +G
Sbjct: 137 IEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKG 196

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I+++LDVPL+ LA RIAA+GTDSRPLLH +SGD+Y  AF  L A+   R +AY++A+  V
Sbjct: 197 ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 256

Query: 231 SISHLADNLGAQDVSDLEPATIALE 255
           S+ ++A   G ++VSDL P  IA+E
Sbjct: 257 SLENIAAKRGYKNVSDLTPTEIAIE 281


>AT4G39540.2 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 10/214 (4%)

Query: 46  LHASSDE-NWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHIL 104
           LH+  DE   +LK K +EV   LNG S++LV            I++ +LGYTF D     
Sbjct: 74  LHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD----- 128

Query: 105 ACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLX-XXXXXXXXXXXXXXXXN 163
            C D  +EQA  G SVA I+E +GE+ FR+ E+EAL KL L                  N
Sbjct: 129 -C-DTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPIN 186

Query: 164 WKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFD-SGDSYKKAFMGLLALSKNRFQA 222
           WKYM +GI+++LDVPL+ LA RIAA+GT SRPLLH D SGD+Y  A   L  +   R +A
Sbjct: 187 WKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 246

Query: 223 YSDADITVSISHLADNLGAQDVSDLEPATIALEV 256
           Y+ A   VS+ ++   LG + VSDL PA IA+E 
Sbjct: 247 YTKASARVSLENITLKLGYRSVSDLTPAEIAIEA 280


>AT4G39540.1 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 10/214 (4%)

Query: 46  LHASSDE-NWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHIL 104
           LH+  DE   +LK K +EV   LNG S++LV            I++ +LGYTF D     
Sbjct: 74  LHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD----- 128

Query: 105 ACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLX-XXXXXXXXXXXXXXXXN 163
            C D  +EQA  G SVA I+E +GE+ FR+ E+EAL KL L                  N
Sbjct: 129 -C-DTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPIN 186

Query: 164 WKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFD-SGDSYKKAFMGLLALSKNRFQA 222
           WKYM +GI+++LDVPL+ LA RIAA+GT SRPLLH D SGD+Y  A   L  +   R +A
Sbjct: 187 WKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 246

Query: 223 YSDADITVSISHLADNLGAQDVSDLEPATIALEV 256
           Y+ A   VS+ ++   LG + VSDL PA IA+E 
Sbjct: 247 YTKASARVSLENITLKLGYRSVSDLTPAEIAIEA 280


>AT2G21940.3 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352622 FORWARD
          Length = 276

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 107/180 (59%), Gaps = 8/180 (4%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           DE+ +LK K +EV   LNG S++LV            ++S+ LGYTF D      C D  
Sbjct: 85  DED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD------C-DTL 136

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           +EQA  G SVA I+  +GENFFR  E++AL KL                   NWKYM +G
Sbjct: 137 IEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKG 196

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I+++LDVPL+ LA RIAA+GTDSRPLLH +SGD+Y  AF  L A+   R +AY++A+  V
Sbjct: 197 ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 256


>AT3G26900.3 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 50  SDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDK 109
           SD   ++K K  ++A  L G S+FLV            +L+EAL Y + D       SD 
Sbjct: 70  SDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFD-------SDN 122

Query: 110 YVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQ 169
            + +A GG   A   ++  E  F++ E+E L +L                   N   +  
Sbjct: 123 LITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRH 182

Query: 170 GITVFLDVPLDTLAKRIAALGTD----SRPLLH-FDS-GDSYKKAFMGLLALSKNRFQAY 223
           GI++++DVPLD  AK     G D    S P    FD+   SY+K+  G           Y
Sbjct: 183 GISIWIDVPLDITAK-----GDDDSFHSEPSPELFDTLKASYEKSRKG-----------Y 226

Query: 224 SDADITVSISHLADNLGAQDVSDLEPATIALEV 256
             AD+++S+  +A  L  +D+  +    IALE+
Sbjct: 227 ETADVSISLEKIATKLEFEDLEAVTSEDIALEI 259


>AT3G26900.2 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 50  SDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDK 109
           SD   ++K K  ++A  L G S+FLV            +L+EAL Y + D       SD 
Sbjct: 70  SDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFD-------SDN 122

Query: 110 YVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQ 169
            + +A GG   A   ++  E  F++ E+E L +L                   N   +  
Sbjct: 123 LITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRH 182

Query: 170 GITVFLDVPLDTLAKRIAALGTD----SRPLLH-FDS-GDSYKKAFMGLLALSKNRFQAY 223
           GI++++DVPLD  AK     G D    S P    FD+   SY+K+  G           Y
Sbjct: 183 GISIWIDVPLDITAK-----GDDDSFHSEPSPELFDTLKASYEKSRKG-----------Y 226

Query: 224 SDADITVSISHLADNLGAQDVSDLEPATIALEV 256
             AD+++S+  +A  L  +D+  +    IALE+
Sbjct: 227 ETADVSISLEKIATKLEFEDLEAVTSEDIALEI 259


>AT3G26900.1 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 50  SDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDK 109
           SD   ++K K  ++A  L G S+FLV            +L+EAL Y + D       SD 
Sbjct: 70  SDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFD-------SDN 122

Query: 110 YVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQ 169
            + +A GG   A   ++  E  F++ E+E L +L                   N   +  
Sbjct: 123 LITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRH 182

Query: 170 GITVFLDVPLDTLAKRIAALGTD----SRPLLH-FDS-GDSYKKAFMGLLALSKNRFQAY 223
           GI++++DVPLD  AK     G D    S P    FD+   SY+K+  G           Y
Sbjct: 183 GISIWIDVPLDITAK-----GDDDSFHSEPSPELFDTLKASYEKSRKG-----------Y 226

Query: 224 SDADITVSISHLADNLGAQDVSDLEPATIALEV 256
             AD+++S+  +A  L  +D+  +    IALE+
Sbjct: 227 ETADVSISLEKIATKLEFEDLEAVTSEDIALEI 259