Jatropha Genome Database

JcCB0010741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010741.10 + phase: 1 /partial
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03090.2 | Symbols: MCCA | MCCA; methylcrotonoyl-CoA carboxyl...    97   3e-21
AT1G03090.1 | Symbols: MCCA | MCCA; methylcrotonoyl-CoA carboxyl...    97   3e-21

>AT1G03090.2 | Symbols: MCCA | MCCA; methylcrotonoyl-CoA carboxylase
           | chr1:739715-743819 FORWARD
          Length = 734

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 43  FRQKIGLDLSDDDE-TQHTTKFETASHPQGSXXXXXXXXXXXXXXXXXXXXEEGQPVLVL 101
           F+QK+G++ S+D+E  QH T  ET+SHP G+                    ++GQP+LVL
Sbjct: 636 FKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVL 695

Query: 102 EAMKMEHVVKAPLAGYVHGLQVTAGQQVSDSTLLFSIK 139
           EAMKMEHVVKAP +G +  L+V AGQQVSD + LF IK
Sbjct: 696 EAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIK 733


>AT1G03090.1 | Symbols: MCCA | MCCA; methylcrotonoyl-CoA carboxylase
           | chr1:739715-743819 FORWARD
          Length = 714

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 43  FRQKIGLDLSDDDE-TQHTTKFETASHPQGSXXXXXXXXXXXXXXXXXXXXEEGQPVLVL 101
           F+QK+G++ S+D+E  QH T  ET+SHP G+                    ++GQP+LVL
Sbjct: 616 FKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVL 675

Query: 102 EAMKMEHVVKAPLAGYVHGLQVTAGQQVSDSTLLFSIK 139
           EAMKMEHVVKAP +G +  L+V AGQQVSD + LF IK
Sbjct: 676 EAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIK 713