Jatropha Genome Database

JcCB0010451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010451.20 + phase: 0 
         (501 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32770.1 | Symbols: VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT ...   717   0.0  

>AT4G32770.1 | Symbols: VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1);
           tocopherol cyclase | chr4:15804981-15807790 FORWARD
          Length = 488

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/481 (71%), Positives = 399/481 (82%), Gaps = 14/481 (2%)

Query: 28  SSFKLFQSSKQRPSNSLFHSLNSGFRSSN------SRIFVSNSVTNPETEFLSSVSPVYA 81
           SSF+L      RP + L  SL   FRS+       SR+  S S  N ET+ +S V PVY 
Sbjct: 15  SSFEL-----SRPVSPLTRSLVP-FRSTKLVPRSISRVSASISTPNSETDKIS-VKPVYV 67

Query: 82  PTPPNRELRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSLENPAFRKKLTPFE 141
           PT PNRELRTPHSGYHFDGT R+FFEGWYF+VSIPE+++SFCFMYS+ENPAFR+ L+P E
Sbjct: 68  PTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLE 127

Query: 142 VAQHGPRSTGVGAQILGAYDKYICQHVEESQNFWGNRHELVLGNTFVAEKGMQPPTKEVP 201
           VA +GPR TGVGAQILGA DKY+CQ+ ++S NFWG+RHELVLGNTF A  G + P KEVP
Sbjct: 128 VALYGPRFTGVGAQILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVP 187

Query: 202 PQDFSRRVSEGFQVTPLWHQGFIRDDGRSDYVQTVKTARWEYSTRPVYGWGDVGSKQKST 261
           P++F+RRVSEGFQ TP WHQG I DDGR+DY +TVK+ARWEYSTRPVYGWGDVG+KQKST
Sbjct: 188 PEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKST 247

Query: 262 AGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFKDAPSYSEKNWGAGFPRKWFWVQC 321
           AGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWG GFPRKWFWVQC
Sbjct: 248 AGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQC 307

Query: 322 NVFEGAIGEVALTAAGGLRQLPGLTENFESAALIGVHYEGIFYEFVPWNGVLNWEISPWG 381
           NVFEGA GEVALTA GGLRQLPGLTE +E+AAL+ VHY+G  YEFVPWNGV+ WE+SPWG
Sbjct: 308 NVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWG 367

Query: 382 YWFITAENKSHLVELKATTKDPGTTLRAPTTESGFAPACKDTCFGDLKLQIWERRYDGTK 441
           YW+ITAEN++H+VEL+A T + GT LRAPTTE G A AC+D+C+G+LKLQIWER YDG+K
Sbjct: 368 YWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSK 427

Query: 442 GKMILDVTSDMAAVEVGGGPWFNTWKGKTT-TPELLNRALNVPVDVEGIFNFLPLFKPPG 500
           GK+IL+  S MAAVE+GGGPWF TWKG T+ TPELL +AL VP+D+E     +P FKPPG
Sbjct: 428 GKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPG 487

Query: 501 L 501
           L
Sbjct: 488 L 488