Jatropha Genome Database

JcCB0009781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009781.20 + phase: 0 
         (368 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48020.1 | Symbols:  | unknown protein | chr5:19462888-194647...   590   e-169

>AT5G48020.1 | Symbols:  | unknown protein | chr5:19462888-19464790
           REVERSE
          Length = 355

 Score =  590 bits (1520), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/368 (75%), Positives = 316/368 (85%), Gaps = 13/368 (3%)

Query: 1   MDVPVIDLTRYLEIADKLSTEPAELSGQLEELGPWLGDLCKEVSRILRETGALVVKDPRC 60
           M++PV+DL+ YL+ +              +ELG  L + C++VSRIL+ETGAL+VKDPRC
Sbjct: 1   MELPVVDLSSYLDFSG-------------DELGSDLLESCRQVSRILKETGALIVKDPRC 47

Query: 61  SAEDNDRFIDMMEKYFERPPEFKRMQERPQLHYQVGVTPEGVEVPRSLVDKEMQEKLESM 120
            A+DNDRFIDMME YFE+P +FKR+Q+RP LHYQVG TPEGVEVPRSLVD+EMQEK  +M
Sbjct: 48  CAQDNDRFIDMMENYFEKPDDFKRLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTM 107

Query: 121 PKEFQPSTPRGPDPKWRYMWRVGPRPLDTRFKELNSEPVIPEGFPEWKETMDSWGHKMIS 180
           P E++P  P+GPD KWRYMWRVGPRP +TRFKELNSEPV+PEGFP W+E MDSWG+KMIS
Sbjct: 108 PNEYKPHIPKGPDHKWRYMWRVGPRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMIS 167

Query: 181 AIEAVAEMAAIGFGLSKDAFTSLMKQGPHLLAPTGSDLRCYGQEGTVFAGYHYDLNFLTI 240
           A+E VAEMAAIGFGL KDAFTSLMKQGPHLLAPTGSDL CY +EGT+FAGYHYDLNFLTI
Sbjct: 168 AVEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTI 227

Query: 241 HGRSRFPGLNIWLRNGQKVEVKVPLGCLLIQTGKQIEWLTAGDCIAGLHEVVVTKRTIDA 300
           HGRSRFPGL IWLRNG+KV VKVP+GCLLIQ GKQIEWLTAG+CIAG+HEVVVT +T DA
Sbjct: 228 HGRSRFPGLYIWLRNGEKVAVKVPVGCLLIQAGKQIEWLTAGECIAGMHEVVVTSKTKDA 287

Query: 301 IKLASEQQRSLWRVSSTLFAHIASDAVLRPLGHFAEFPLASKYPPICAGEFVEQELAVIN 360
           I LA EQ RSLWRVSSTLFAHIASDA L+PLGHFAE  LASKYP I AGE+VEQEL+VIN
Sbjct: 288 ITLAKEQNRSLWRVSSTLFAHIASDAELKPLGHFAESSLASKYPAIPAGEYVEQELSVIN 347

Query: 361 LKGSKGRS 368
           LKG+KG S
Sbjct: 348 LKGNKGSS 355