Jatropha Genome Database
- JcCB0009541.40
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0009541.40 + phase: 0 /partial
(190 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); ... 255 1e-68
AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 208 2e-54
AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 208 2e-54
AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 208 2e-54
AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ... 176 1e-44
AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); ... 172 1e-43
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUP... 74 6e-14
AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTA... 69 1e-12
AT3G56350.1 | Symbols: | superoxide dismutase (Mn), putative / ... 68 4e-12
>AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2);
superoxide dismutase | chr5:20773357-20775635 REVERSE
Length = 305
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 115/167 (68%), Positives = 147/167 (88%), Gaps = 7/167 (4%)
Query: 29 FKWRKERHVRRQTG-----SAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYV 83
+W+ R+ +R+ G S ++TA FELKPPPYPL+ALEPHMS++TL+YHWGKHH+ YV
Sbjct: 29 MQWK--RNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYV 86
Query: 84 DNLNKQIVGTELDSLPLEDVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSG 143
+NLNKQI+GT+LD+L LE+VV+++YNKG++LPAFNNAAQAWNHEFFW ++PGGGGKP+G
Sbjct: 87 ENLNKQILGTDLDALSLEEVVLLSYNKGNMLPAFNNAAQAWNHEFFWESIQPGGGGKPTG 146
Query: 144 ELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAYKANRLNVENA 190
ELL+LIERDFGSF++F+E F+SAAA+ FGSGW WLAYKANRL+V NA
Sbjct: 147 ELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKANRLDVANA 193
>AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 123/146 (84%)
Query: 42 GSAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLE 101
S+ VTA + LKPPP+ L+ALEPHMSK TLE+HWGKHHRAYVDNL KQ++GTEL+ PLE
Sbjct: 3 ASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLE 62
Query: 102 DVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVE 161
++ TYN GD+LPAFNNAAQAWNHEFFW MKPGGGGKPSGELL L+ERDF S++KF E
Sbjct: 63 HIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYE 122
Query: 162 EFRSAAATQFGSGWAWLAYKANRLNV 187
EF +AAATQFG+GWAWLAY +L V
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLKV 148
>AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 123/146 (84%)
Query: 42 GSAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLE 101
S+ VTA + LKPPP+ L+ALEPHMSK TLE+HWGKHHRAYVDNL KQ++GTEL+ PLE
Sbjct: 3 ASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLE 62
Query: 102 DVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVE 161
++ TYN GD+LPAFNNAAQAWNHEFFW MKPGGGGKPSGELL L+ERDF S++KF E
Sbjct: 63 HIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYE 122
Query: 162 EFRSAAATQFGSGWAWLAYKANRLNV 187
EF +AAATQFG+GWAWLAY +L V
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLKV 148
>AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12886501 REVERSE
Length = 212
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 123/146 (84%)
Query: 42 GSAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLE 101
S+ VTA + LKPPP+ L+ALEPHMSK TLE+HWGKHHRAYVDNL KQ++GTEL+ PLE
Sbjct: 3 ASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLE 62
Query: 102 DVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVE 161
++ TYN GD+LPAFNNAAQAWNHEFFW MKPGGGGKPSGELL L+ERDF S++KF E
Sbjct: 63 HIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYE 122
Query: 162 EFRSAAATQFGSGWAWLAYKANRLNV 187
EF +AAATQFG+GWAWLAY +L V
Sbjct: 123 EFNAAAATQFGAGWAWLAYSNEKLKV 148
>AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
copper ion binding / superoxide dismutase |
chr4:12884649-12885660 REVERSE
Length = 186
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 104/122 (85%)
Query: 66 MSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYNKGDVLPAFNNAAQAWN 125
MSK TLE+HWGKHHRAYVDNL KQ++GTEL+ PLE ++ TYN GD+LPAFNNAAQAWN
Sbjct: 1 MSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWN 60
Query: 126 HEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAYKANRL 185
HEFFW MKPGGGGKPSGELL L+ERDF S++KF EEF +AAATQFG+GWAWLAY +L
Sbjct: 61 HEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKL 120
Query: 186 NV 187
V
Sbjct: 121 KV 122
>AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3);
superoxide dismutase | chr5:7850624-7852241 FORWARD
Length = 263
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 46 VTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTE-LDSLPLEDVV 104
V A + LK PPYPL+ALEP+MS+ TLE HWGKHHR YVDNLNKQ+ + L +E+++
Sbjct: 46 VEAYYGLKTPPYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELI 105
Query: 105 IVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVEEFR 164
TYN G+ LP FNNAAQ +NH+FFW M+PGGG P +L+ I++DFGSF F E+F
Sbjct: 106 KATYNNGNPLPEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFT 165
Query: 165 SAAATQFGSGWAWLAYKANRLNVE 188
+AA TQFGSGW WL K +E
Sbjct: 166 NAALTQFGSGWVWLVLKREERRLE 189
>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE
SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide
dismutase | chr3:3418015-3419581 FORWARD
Length = 231
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 50 FELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYN 109
F L PY ALEP +S + ++ H KHH+AYV N N + +LD N
Sbjct: 31 FTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNAL--EQLDQ---------AVN 79
Query: 110 KGDVLPA--------FNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKK 158
KGD FN NH FW + P GGG P G L I+ FGS +
Sbjct: 80 KGDASTVVKLQSAIKFNGGGHV-NHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEG 138
Query: 159 FVEEFRSAAATQFGSGWAWLA 179
V++ + A GSGW WL
Sbjct: 139 LVKKMSAEGAAVQGSGWVWLG 159
>AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE
1); metal ion binding / superoxide dismutase |
chr3:3418015-3419581 FORWARD
Length = 230
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 50 FELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYN 109
F L PY ALEP +S + ++ H KHH+AYV N N + +LD N
Sbjct: 31 FTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNAL--EQLDQ---------AVN 79
Query: 110 KGDVLPA--------FNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKK 158
KGD FN NH FW + P GGG P G L I+ FGS +
Sbjct: 80 KGDASTVVKLQSAIKFNGGGHV-NHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEG 138
Query: 159 FVEEFRSAAATQFGSGWAWLA 179
V++ + A GSGW WL
Sbjct: 139 LVKKMSAEGAAVQGSGW-WLG 158
>AT3G56350.1 | Symbols: | superoxide dismutase (Mn), putative /
manganese superoxide dismutase, putative |
chr3:20894155-20895625 REVERSE
Length = 241
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 56 PYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSL--PLEDVVIVTYNKGDV 113
PY +ALEP +S++ + H KHH+ YV NK L+SL + D + K
Sbjct: 42 PYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKA-----LNSLRSAMADGDHSSVVKLQS 96
Query: 114 LPAFNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKKFVEEFRSAAATQ 170
L FN NH FW + P GGG P L I+ FGS + +++ + A
Sbjct: 97 LIKFNGGGHV-NHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEGAAV 155
Query: 171 FGSGWAW--LAYKANRLNVE 188
GSGW W L + RL VE
Sbjct: 156 QGSGWVWFGLDRELKRLVVE 175