Jatropha Genome Database

JcCB0009541.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.30 + phase: 0 
         (208 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51110.1 | Symbols:  | 4-alpha-hydroxytetrahydrobiopterin deh...   223   5e-59
AT1G29810.1 | Symbols:  | dehydratase family | chr1:10435606-104...   109   1e-24

>AT5G51110.1 | Symbols:  | 4-alpha-hydroxytetrahydrobiopterin
           dehydratase | chr5:20778316-20779380 REVERSE
          Length = 220

 Score =  223 bits (569), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 55  PFPAEIESGFAEKVVGNVDTEHKILIPNISALSLAQQQCTPVSPLQAPIDKDDAQKLLKK 114
           P+P EI S F +KV+G   TEHKILIPN S LSL+Q QC+PVS  Q P+  DDA+ LL K
Sbjct: 66  PYPEEIASQFGDKVLGCQSTEHKILIPNASVLSLSQLQCSPVSSSQPPLSGDDARTLLHK 125

Query: 115 VLGWRLLEEE-NGLKLQCLWKLRDFKCGVELINRIYKVAEASGHFPDLHLVDTNQVRAEL 173
           VLGW +++ E  GLK++C+WK+RDF CGVELINRI+KVAEASGH+P LHL    QVRAEL
Sbjct: 126 VLGWSIVDNEAGGLKIRCMWKVRDFGCGVELINRIHKVAEASGHYPSLHLESPTQVRAEL 185

Query: 174 WTSSIGGLSMNDFIVAAKMDEIKTSDLVPRKRVWA 208
           +TSSIGGLSMNDFI+AAK+D+IKTSDL PRKR WA
Sbjct: 186 FTSSIGGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220


>AT1G29810.1 | Symbols:  | dehydratase family |
           chr1:10435606-10437406 REVERSE
          Length = 187

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 88  LAQQQCTPVSP--LQAPIDKDDAQKLLKKVLGWRLLEEENGLKLQCLWKLRDFKCGVELI 145
           L+ ++C P +   L+A  ++  AQ LL+KV GW L  + + LKL   W+++ F  G++  
Sbjct: 66  LSTKKCVPCNAKDLRAMTEQS-AQDLLQKVAGWDLANDNDTLKLHRSWRVKSFTKGLDFF 124

Query: 146 NRIYKVAEASGHFPDLHLVDTNQVRAELWTSSIGGLSMNDFIVAAKMDEIKTSDLVPRKR 205
            R+  +AE+ GH PDLHLV  N V+ E+WT +IGGL+ NDFI+AAK++E++  DL+ +K+
Sbjct: 125 QRVADIAESEGHHPDLHLVGWNNVKIEIWTHAIGGLTENDFILAAKINELQVEDLLRKKK 184

Query: 206 V 206
           V
Sbjct: 185 V 185