Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (167 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD    104   2e-23

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 23/109 (21%)

Query: 58  LHKFVKDAVERDHKLDDILIPIIQHVLLISKFPFCTLLIFDVKSSINFSLRSKDLKHGGQ 117
           L K V DA ERD  + +IL+PII+H                       +LR KD KHG  
Sbjct: 60  LEKCVIDAAERDEAMSEILVPIIEH-----------------------TLRFKDSKHGNP 96

Query: 118 ALILINWLFQDEFFFQAVVRSLADIIDRKDDRYIALGWCILIRGLVEYE 166
           A+IL+NWLFQDE  FQAV R+L++II R +DR++ALGWC+LIR LVE E
Sbjct: 97  AMILLNWLFQDEVLFQAVSRNLSNIILRNEDRFLALGWCLLIRRLVECE 145