Jatropha Genome Database

JcCB0009491.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009491.30 + phase: 1 /TE
         (254 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    82   4e-16
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    57   1e-08

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 91  RILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSKK 150
           +IL Y+  T   GL+YS      L   SD  F      R+ST G C F G++L+ W SKK
Sbjct: 419 KILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKK 478

Query: 151 QTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKL-EIVPIKCGNISAINLSKNPVQH 209
           Q  V+ S+AEAEY         ++W+ Q   +  L L +   + C N +AI+++ N V H
Sbjct: 479 QQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFH 538

Query: 210 SRTKHIELKHQFIRD 224
            RTKHIE     +R+
Sbjct: 539 ERTKHIESDCHSVRE 553


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 77  ISIMSQRI------SFNCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRK 130
           ++I+ QR+       F+  KR+LRY+  T   GL+  K    ++    D D+AG    R+
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180

Query: 131 STYGTCQFRGSALVLWFSKKQTFVALSTAEAEYITTRSCVAPVLW 175
           ST G C F G  ++ W +K+Q  V+ S+ E EY       A + W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225