Jatropha Genome Database

JcCB0009491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009491.20 - phase: 1 /TE
         (219 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    56   1e-08

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 75/177 (42%), Gaps = 16/177 (9%)

Query: 4   GSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQ------REF*GTYKAHLIMAYSIEN 57
           G L+YL I+  D  FA+  LS+F +AP   H  QQ          GT    L  +   E 
Sbjct: 383 GRLMYLQITRLDISFAVNKLSQFSEAPRLAH--QQAVMKILHYIKGTVGQGLFYSSQAEM 440

Query: 58  PQQSN*WDFKIAIRLTLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YFAASV 113
             Q     F  A   +   T R+       L   L   + KK      S+ EA Y A S 
Sbjct: 441 QLQV----FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496

Query: 114 TVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIRE 170
             ++ +WL +    L+    K T +  DN A I +  N VF  +TKHI+   H++RE
Sbjct: 497 ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553