Jatropha Genome Database
- JcCB0008691.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0008691.10 + phase: 2 /partial
(174 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G42950.1 | Symbols: | glycoside hydrolase family 28 protein ... 296 3e-81
AT1G19170.1 | Symbols: | glycoside hydrolase family 28 protein ... 287 2e-78
AT3G62110.1 | Symbols: | glycoside hydrolase family 28 protein ... 112 1e-25
AT3G48950.1 | Symbols: | glycoside hydrolase family 28 protein ... 110 6e-25
AT2G23900.1 | Symbols: | glycoside hydrolase family 28 protein ... 108 2e-24
AT4G33440.1 | Symbols: | glycoside hydrolase family 28 protein ... 105 2e-23
AT5G41870.1 | Symbols: | glycoside hydrolase family 28 protein ... 100 4e-22
AT4G23500.1 | Symbols: | glycoside hydrolase family 28 protein ... 97 4e-21
AT3G61490.2 | Symbols: | glycoside hydrolase family 28 protein ... 93 7e-20
AT3G61490.1 | Symbols: | glycoside hydrolase family 28 protein ... 93 7e-20
AT3G06770.1 | Symbols: | glycoside hydrolase family 28 protein ... 92 1e-19
AT3G06770.3 | Symbols: | glycoside hydrolase family 28 protein ... 92 1e-19
AT3G06770.2 | Symbols: | glycoside hydrolase family 28 protein ... 92 1e-19
AT4G23820.1 | Symbols: | glycoside hydrolase family 28 protein ... 90 6e-19
AT5G49215.2 | Symbols: | glycoside hydrolase family 28 protein ... 87 4e-18
AT5G49215.1 | Symbols: | glycoside hydrolase family 28 protein ... 87 5e-18
AT3G16850.1 | Symbols: | glycoside hydrolase family 28 protein ... 87 7e-18
AT1G80170.1 | Symbols: | polygalacturonase, putative / pectinas... 61 4e-10
AT3G07850.1 | Symbols: | exopolygalacturonase / galacturan 1,4-... 59 1e-09
AT1G80140.1 | Symbols: | glycoside hydrolase family 28 protein ... 57 5e-09
AT5G44830.1 | Symbols: | glycoside hydrolase family 28 protein ... 57 7e-09
AT3G14040.1 | Symbols: | exopolygalacturonase / galacturan 1,4-... 57 7e-09
AT1G56710.1 | Symbols: | glycoside hydrolase family 28 protein ... 55 3e-08
AT3G15720.2 | Symbols: | glycoside hydrolase family 28 protein ... 54 4e-08
AT3G15720.1 | Symbols: | glycoside hydrolase family 28 protein ... 54 4e-08
AT1G02460.1 | Symbols: | glycoside hydrolase family 28 protein ... 53 8e-08
AT3G26610.1 | Symbols: | polygalacturonase, putative / pectinas... 52 2e-07
AT2G43870.1 | Symbols: | polygalacturonase, putative / pectinas... 51 3e-07
AT1G65570.1 | Symbols: | polygalacturonase, putative / pectinas... 51 4e-07
AT3G07970.1 | Symbols: QRT2 | QRT2 (QUARTET 2); polygalacturonas... 51 5e-07
AT3G59850.1 | Symbols: | polygalacturonase, putative / pectinas... 51 5e-07
AT1G05650.1 | Symbols: | polygalacturonase, putative / pectinas... 50 9e-07
AT3G57510.1 | Symbols: ADPG1 | ADPG1; polygalacturonase | chr3:2... 50 1e-06
AT5G14650.1 | Symbols: | polygalacturonase, putative / pectinas... 49 1e-06
AT1G05660.1 | Symbols: | polygalacturonase, putative / pectinas... 49 1e-06
AT1G60590.1 | Symbols: | polygalacturonase, putative / pectinas... 49 2e-06
AT1G10640.1 | Symbols: | polygalacturonase | chr1:3515478-35178... 48 3e-06
AT5G44840.1 | Symbols: | glycoside hydrolase family 28 protein ... 48 3e-06
AT1G48100.1 | Symbols: | glycoside hydrolase family 28 protein ... 47 6e-06
>AT3G42950.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:15015383-15017800 FORWARD
Length = 484
Score = 296 bits (759), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 136/173 (78%), Positives = 160/173 (92%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AG+SIGSEMSGGVSN+TVEN+L+WSSRR VRIKTAPGRGGYVR IT+RN+T D +RVGIV
Sbjct: 311 AGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIV 370
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+KTDYNEHPD GF+P+A P LE+I++ G++GQGVRVPVRI GS+EIPV+NVTFRDMSVG+
Sbjct: 371 IKTDYNEHPDGGFNPQAFPILENINYTGIYGQGVRVPVRIQGSKEIPVKNVTFRDMSVGI 430
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQGQLIKHSPSQNLTDIDYD 173
TYKKKHIFQCA+V+GRVIGTIFPAPC+NLDRYDEQ +L+K S SQN TDIDY+
Sbjct: 431 TYKKKHIFQCAYVEGRVIGTIFPAPCDNLDRYDEQERLVKQSDSQNATDIDYE 483
>AT1G19170.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:6616777-6618875 FORWARD
Length = 506
Score = 287 bits (734), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 132/173 (76%), Positives = 153/173 (88%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AGVSIGSEMSGG+SNVT+ENLL+W+SRR +RIKTAPGRGGY+R+ITY+NLT DNVRVGIV
Sbjct: 333 AGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRVGIV 392
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+KTDYNEH D+ +D KA P L SF G+HGQGVRVPVRIHGSE+IPVRNVTFRDMSVGL
Sbjct: 393 IKTDYNEHADDNYDRKAYPILSGFSFAGIHGQGVRVPVRIHGSEQIPVRNVTFRDMSVGL 452
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQGQLIKHSPSQNLTDIDYD 173
TYKKKHIFQC+FV+GRV G+IFP PCEN D YDE+G+L+K + N+ DIDYD
Sbjct: 453 TYKKKHIFQCSFVKGRVFGSIFPRPCENFDVYDEEGRLVKPAAESNVADIDYD 505
>AT3G62110.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22997313-22999503 REVERSE
Length = 471
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+G++IGSEMSGGVS + +++L +++S +RIKT+ GRGGYVR++ N+ DNV+ I
Sbjct: 287 SGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKLDNVKKAIR 346
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
Y EHPDE +DPKA+P +E I+F V+G G+ V + G E +N+ F ++++ +
Sbjct: 347 FTGKYGEHPDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNICFLNVTLRV 406
Query: 121 TY-KKKHIFQCAFVQG 135
KK ++C+ V+G
Sbjct: 407 KKNSKKSPWECSNVRG 422
>AT3G48950.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:18148017-18149987 FORWARD
Length = 469
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AGV++GSEMSGG+ +V +E++ + ++ A+RIKTA GRG YV+ I R +T ++
Sbjct: 290 AGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYVKDIYARRITMKTMKYVFW 349
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ +Y HPDEGFDPKA+P + +I++ + + V + + G ++ P + ++++ L
Sbjct: 350 MSGNYGSHPDEGFDPKALPEITNINYRDMTAENVTMSASLDGIDKDPFTGICISNVTIAL 409
Query: 121 TYK-KKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQGQLIKHSPSQNLTDID 171
K KK + C V G V + P PC L Q + + + +L I+
Sbjct: 410 AAKAKKMQWNCTDVAG-VTSRVTPEPCSLLPEKKAQAKNVDCAFPSDLIPIE 460
>AT2G23900.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr2:10174556-10176489 FORWARD
Length = 477
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AG+++GSEMSGG+ +V +E++ + ++ A+RIKTA GRGGYV+ I R T ++
Sbjct: 301 AGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIFARRFTMKTMKYVFW 360
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ YN+HP GFDPKA+P + +I++ + V P R+ G + P + ++ + L
Sbjct: 361 MSGAYNQHPASGFDPKAMPVITNINYRDMTADNVTQPARLDGFKNDPFTKICMSNIKIDL 420
Query: 121 TYK-KKHIFQCAFVQGRVIGTIFPAPCENL 149
+ KK ++ C + G V + P PC L
Sbjct: 421 AAEPKKLLWNCTSISG-VSSKVTPKPCSLL 449
>AT4G33440.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:16092020-16094732 FORWARD
Length = 475
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+GV IGSEMSGG+ N+TVE++ VW S +RIKT GRGGY+ +IT+ N+ + V+V I
Sbjct: 316 SGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIR 375
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ N+H D+ +DPKA+PR++ I V R + G E ++V R++++ L
Sbjct: 376 FSSGSNDHSDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGVEGTSFQDVCLRNVTL-L 434
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENL 149
K ++C V G +FP C L
Sbjct: 435 GLPKTEKWKCKDVSGYA-SDVFPLSCPQL 462
>AT5G41870.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:16758817-16760490 REVERSE
Length = 449
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AG++IGSE SGG+ NVTVEN+ +++S + IKT GRGG ++ IT + + VR GI
Sbjct: 289 AGIAIGSETSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIK 348
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ D +HPD+ F+ A+P + I+ V G V + G ++ P N+ F ++++
Sbjct: 349 ISGDTGDHPDDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTG 408
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQG 156
T K+ I++C+ V G + P PC L +QG
Sbjct: 409 T-KRSPIWKCSDVVGAA-DKVNPTPCPELSATTQQG 442
>AT4G23500.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:12264640-12267074 FORWARD
Length = 495
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
A +++GSEMSGG+ +V E+++ +S +RIKTA GRGGYV+ + R +T ++
Sbjct: 312 AVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTMMTMKYVFW 371
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ Y HPD+ +DPKA+P +++I++ + + V +P ++ G + ++++ L
Sbjct: 372 MTGSYGSHPDDHYDPKALPVIQNINYQDMVAENVTMPAQLAGISGDQFTGICISNVTITL 431
Query: 121 TYK-KKHIFQCAFVQGRVIGTIFPAPCENL 149
+ K KK ++ C V G G + P PC+ L
Sbjct: 432 SKKPKKVLWNCTDVSGYTSG-VTPQPCQLL 460
>AT3G61490.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22758439-22760137 FORWARD
Length = 476
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
A +++GSEMSGG+ +V E++ + + VRIKTA GRG +V++I + + ++
Sbjct: 289 AAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFVKNIYVKGMNLHTMKWVFW 348
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ +Y H D +DP A+P + I++ + + V + R+ G P + + ++ +
Sbjct: 349 MTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEGISGDPFTGICISNATISM 408
Query: 121 TYK-KKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQ 155
K KK I+ C+ V+G G + P PC+ LD + +
Sbjct: 409 AAKHKKAIWMCSDVEGVTSG-VDPKPCDLLDGQESE 443
>AT3G61490.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:22758439-22760137 FORWARD
Length = 476
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
A +++GSEMSGG+ +V E++ + + VRIKTA GRG +V++I + + ++
Sbjct: 289 AAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFVKNIYVKGMNLHTMKWVFW 348
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ +Y H D +DP A+P + I++ + + V + R+ G P + + ++ +
Sbjct: 349 MTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEGISGDPFTGICISNATISM 408
Query: 121 TYK-KKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQ 155
K KK I+ C+ V+G G + P PC+ LD + +
Sbjct: 409 AAKHKKAIWMCSDVEGVTSG-VDPKPCDLLDGQESE 443
>AT3G06770.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2136616 REVERSE
Length = 377
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+ +S GSEMSGG+S+V V+N + S + +T GRGGY++ I N+ + IV
Sbjct: 218 SSISFGSEMSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIV 277
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ HPD+ +D A+P + I + G+ + + ++ G +E P +VT ++S+ +
Sbjct: 278 ANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSM 337
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDR 151
+ +QC++V G ++ P PC L R
Sbjct: 338 SSGSSVSWQCSYVYGSS-ESVIPEPCPELKR 367
>AT3G06770.3 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2136616 REVERSE
Length = 377
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+ +S GSEMSGG+S+V V+N + S + +T GRGGY++ I N+ + IV
Sbjct: 218 SSISFGSEMSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIV 277
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ HPD+ +D A+P + I + G+ + + ++ G +E P +VT ++S+ +
Sbjct: 278 ANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSM 337
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDR 151
+ +QC++V G ++ P PC L R
Sbjct: 338 SSGSSVSWQCSYVYGSS-ESVIPEPCPELKR 367
>AT3G06770.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:2135119-2137033 REVERSE
Length = 446
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+ +S GSEMSGG+S+V V+N + S + +T GRGGY++ I N+ + IV
Sbjct: 287 SSISFGSEMSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIV 346
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ HPD+ +D A+P + I + G+ + + ++ G +E P +VT ++S+ +
Sbjct: 347 ANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSM 406
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENLDR 151
+ +QC++V G ++ P PC L R
Sbjct: 407 SSGSSVSWQCSYVYGSS-ESVIPEPCPELKR 436
>AT4G23820.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr4:12397217-12400050 REVERSE
Length = 444
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AG++IGSE SGG+ N+ E++ + + V IKT GRGGY+++I ++ D + GI
Sbjct: 284 AGIAIGSETSGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIK 343
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ D +HPDE ++P A+P ++ I V G VR I G + P + ++++
Sbjct: 344 IAGDTGDHPDENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHG 403
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENL 149
+ ++C+ V G + + P PC L
Sbjct: 404 SLNSYKTWKCSDVSGTSL-KVSPWPCSEL 431
>AT5G49215.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:19953670-19955874 FORWARD
Length = 447
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+ +S GSEMSGG+S+V V + + +S + +T GRGGY++ I N+ NV +
Sbjct: 285 SSISFGSEMSGGISDVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFL 344
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ HPD GFD A P + I + G+ + G++E P ++ ++S+ +
Sbjct: 345 ANGSFGTHPDSGFDENAYPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSI 404
Query: 121 --TYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDE 154
+ +QC++V G + P PC L +D
Sbjct: 405 KNSASPADSWQCSYVDGSS-EFVVPEPCLELKSFDS 439
>AT5G49215.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:19953670-19955874 FORWARD
Length = 449
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
+ +S GSEMSGG+S+V V + + +S + +T GRGGY++ I N+ NV +
Sbjct: 287 SSISFGSEMSGGISDVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFL 346
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
+ HPD GFD A P + I + G+ + G++E P ++ ++S+ +
Sbjct: 347 ANGSFGTHPDSGFDENAYPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSI 406
Query: 121 --TYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDE 154
+ +QC++V G + P PC L +D
Sbjct: 407 KNSASPADSWQCSYVDGSS-EFVVPEPCLELKSFDS 441
>AT3G16850.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5748692-5750981 FORWARD
Length = 455
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 1 AGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIV 60
AG+S GSEMSGGVS+VTVE L + SS V +T GRGGY+R+IT ++ +V IV
Sbjct: 284 AGISFGSEMSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIV 343
Query: 61 VKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGL 120
HPD+ FD A+P + I G + V + G E P ++ D + L
Sbjct: 344 ANGHTGSHPDDKFDRDALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLAD--IHL 401
Query: 121 TYKKKHIFQCAFVQGRVIGTIFPAPCENL 149
+ + + C+ V G + P PC+ L
Sbjct: 402 QTRSEESWICSNVSG-FSDDVSPEPCQEL 429
>AT1G80170.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:30153646-30155683 REVERSE
Length = 444
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS + V ++TV+ ++ + VRIKT G G V I +RN+ +NV
Sbjct: 273 GISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSN 332
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGV-RVPVRIHGSEEIPVRNVTFRDM 116
I++ Y + + + +E+ISF+ V G + ++I S+ P RN+ +D+
Sbjct: 333 PIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDI 392
Query: 117 ----SVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLD 150
S G + + C G G ++P PC + D
Sbjct: 393 DLEPSNGDGFTESF---CWEAYGSSSGQVYPPPCLSDD 427
>AT3G07850.1 | Symbols: | exopolygalacturonase / galacturan
1,4-alpha-galacturonidase / pectinase |
chr3:2505813-2507438 REVERSE
Length = 444
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGR-GGYVRHITYRNLTFDNVR 56
G+SIGS V VTV L+ ++ VRIKT PG G +I + ++T DNV
Sbjct: 285 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVS 344
Query: 57 VGIVVKTDYNEHPDEGFDPKAVP---RLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVT 112
+ +++ +Y + G VP +L D++ G+ G +V V++ S+ +P N+
Sbjct: 345 LPVLIDQEYCPY---GHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIA 401
Query: 113 FRDMSVGLTYKKKH---IFQCAFVQGRVIGTIFPAPCENLDR 151
D++ L + K + C+ ++ + G + PA C + +
Sbjct: 402 LSDIN--LVHNGKEGPAVSACSNIKPILSGKLVPAACTEVAK 441
>AT1G80140.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:30146611-30148180 FORWARD
Length = 336
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 2 GVSIGSEMSGGVSNVTVENLLV-----WSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVR 56
GVSIGS GG + VTVEN+ V + RIKT PG GYVR I + ++ F +V+
Sbjct: 185 GVSIGSLGRGG-TEVTVENIRVSHVNFTGTTNGARIKTWPGGTGYVRGIEFFDIRFSSVQ 243
Query: 57 VGIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGS-EEIPVRNVTFR 114
I++ Y P K V +E + ++ + G +V +++ S E +P N+ R
Sbjct: 244 NPIIIDQFYGCAPTCVETMKGV-HIEKVRYMKMSGTSATKVAMKLECSGESVPCSNLFMR 302
Query: 115 DMSVGLTYKKKHIFQ-CAFVQGRVIGTIFPAPC 146
D+ + + C+F G G I P C
Sbjct: 303 DIDLSPADGIDSVSSLCSFAHGSAQGIIRPLSC 335
>AT5G44830.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:18100128-18101885 REVERSE
Length = 332
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 2 GVSIGSEMSGG----VSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+S+GS G V NV V N + + VRIKT P GY R+I +++LTF +
Sbjct: 181 GISVGSLGRDGEESIVENVQVTNCTFFRTDNGVRIKTWPNGKGYARNILFKDLTFRESKN 240
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVP-VRIHGSEEIPVRNVTFRDM 116
I++ +Y + + AV + +++F + G R ++I SE +++ +
Sbjct: 241 PIIIDQNYVDKGRLDVEESAVA-ISNVTFTDIRGTSQRNEIIKIDCSEVTYCKDIVLDKI 299
Query: 117 SVGLTYKKKHIFQCAFVQGRVIGT 140
+ K + +C+ V G+ I T
Sbjct: 300 DIATVDGNKPVVECSNVYGKSINT 323
>AT3G14040.1 | Symbols: | exopolygalacturonase / galacturan
1,4-alpha-galacturonidase / pectinase |
chr3:4648607-4650226 REVERSE
Length = 445
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGR-GGYVRHITYRNLTFDNVR 56
G+SIGS V VTV L+ ++ VRIKT PG G +I + ++T DNV
Sbjct: 286 GISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVS 345
Query: 57 VGIVVKTDYNE--HPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTF 113
+ +++ +Y H G K +L D++ + G +V V++ S+ +P N+
Sbjct: 346 LPVLIDQEYCPYGHCKAGVPSKV--KLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIAL 403
Query: 114 RDMSVGLTYKKKH---IFQCAFVQGRVIGTIFPAPCENLDR 151
D++ L + K + C+ ++ + G + PA C + +
Sbjct: 404 SDIN--LVHNGKEGPAVSACSNIKPILSGKLVPAACTEVAK 442
>AT1G56710.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:21258206-21259922 REVERSE
Length = 434
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VSN+TV N +W+S VRIKT G G V I + N+ NVR
Sbjct: 276 GISIGSLGVHNSQAYVSNITVTNSTIWNSDNGVRIKTWQGGSGSVSRIVFSNILMVNVRN 335
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQ-GVRV-PVRIHGSEEIPVRNVTFRD 115
I++ Y + + AV + D+ + + G +R P+ S+ +P N+T +
Sbjct: 336 PIMIDQYYCQTNNCANQTSAV-IISDVLYANIKGTYDLRSPPIHFGCSDSVPCTNLTLTE 394
Query: 116 MSVGLTYKKKHIFQ--CAFVQGRVIGTIFPAPC 146
+ + K +H+ C G + T+ P C
Sbjct: 395 VDL-FPSKGQHLENPFCWNAYGSMKITVPPVYC 426
>AT3G15720.2 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5325329-5327617 REVERSE
Length = 452
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 2 GVSIGSEMSGG----VSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS G V NV V+N + RIKT G GY R IT+ +T DNV
Sbjct: 230 GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVEN 289
Query: 58 GIVVKTDYN-EHPDEGFDPKA----VPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVT 112
I++ YN D D K+ V ++ +FIG V R SE +P +
Sbjct: 290 PIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRC--SERVPCTEIF 347
Query: 113 FRDMSV 118
RDM +
Sbjct: 348 LRDMKI 353
>AT3G15720.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr3:5325329-5327457 REVERSE
Length = 456
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 2 GVSIGSEMSGG----VSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS G V NV V+N + RIKT G GY R IT+ +T DNV
Sbjct: 234 GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVEN 293
Query: 58 GIVVKTDYN-EHPDEGFDPKA----VPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVT 112
I++ YN D D K+ V ++ +FIG V R SE +P +
Sbjct: 294 PIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRC--SERVPCTEIF 351
Query: 113 FRDMSV 118
RDM +
Sbjct: 352 LRDMKI 357
>AT1G02460.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:504897-507099 REVERSE
Length = 491
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VSN+TV + ++ S VRIKT G G V +T+ N+ D+VR
Sbjct: 320 GISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVRN 379
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQ-GVRVPVRIHG-SEEIPVRNVTFRD 115
I++ Y D AV + DI++ G+ G +R P G S+ +P N+T D
Sbjct: 380 PIIIDQYYCMTKDCANKTSAV-FVSDIAYQGIKGTYDIRSPPMHFGCSDAVPCTNLTLSD 438
Query: 116 MSV 118
+ +
Sbjct: 439 IEL 441
>AT3G26610.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:9777025-9780267 FORWARD
Length = 470
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIG + VS++ VE++ + ++ VRIKT G G V+++T+ N+ +V+V
Sbjct: 289 GISIGGLGKDKSVACVSDIIVEDISIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVKDVKV 348
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMS 117
IV+ Y + +AV + + + + G PVRI S +P +V D+
Sbjct: 349 PIVIDQYYCDKSKCKNQTRAV-SISGVKYNNIVGSFTVQPVRIACSNNVPCMDVDLMDIR 407
Query: 118 V-------GLTYKKKHIFQCAFVQGRVIGTIFPA 144
+ GL ++ C G+ G + P+
Sbjct: 408 LRPSGGIRGLQTHQQQQALCWNSYGKTQGPLVPS 441
>AT2G43870.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr2:18166615-18168264 REVERSE
Length = 384
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKT-APGRGGYVRHITYRNLTFDNVR 56
G+SIGS + GV NVTV+ + + VRIK+ A G+ ++I +++ +NV
Sbjct: 236 GISIGSLGKDSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVE 295
Query: 57 VGIVVKTDYNEHPDEGFDPKAVP--RLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTF 113
I++ D N PD P+ V ++ D+ F+ +HG V V++ S + P +
Sbjct: 296 NPIII--DQNYCPDHDC-PRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTGIRL 352
Query: 114 RDMSVGLTYKKK 125
D V LTY+ K
Sbjct: 353 ED--VKLTYQNK 362
>AT1G65570.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:24374098-24375846 REVERSE
Length = 397
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 2 GVSIGSEMSG----GVSNVTVENLLVWSSRRAVRIKTAP-GRGGYVRHITYRNLTFDNVR 56
G+SIGS GV NVTV+N + + +RIK+ P G+V + + NV
Sbjct: 247 GISIGSLAKSIEEQGVENVTVKNAVFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVS 306
Query: 57 VGIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTFRD 115
I++ +Y ++ ++ D+ + G+ G + +++ SE++P + R
Sbjct: 307 YPILIDQNYCPGDSSCPSQESGIKINDVIYSGIMGTSATEIAIKMDCSEKVPCTGI--RM 364
Query: 116 MSVGLT-YKKKHIFQCAFVQGRVIGTIFPAPC 146
++ LT Y + C V G+ +G + P+ C
Sbjct: 365 QAINLTSYGEAAKTSCTNVSGKQLGLVTPSGC 396
>AT3G07970.1 | Symbols: QRT2 | QRT2 (QUARTET 2); polygalacturonase |
chr3:2541006-2543370 FORWARD
Length = 439
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VSNV V + + VRIKT G G ++I ++++ NV
Sbjct: 289 GISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTN 348
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVR-VPVRIHGSEEIPVRNVTFRDM 116
I++ DY + + + K+ ++ ++ + + G R + V+ S+ IP R ++ +++
Sbjct: 349 PIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNV 408
Query: 117 S-VGLTYKKKHIFQCAFVQGRVIGTIFP 143
V T + C+ V+ G + P
Sbjct: 409 KLVDQTQQDVSKASCSNVKLDTRGNVSP 436
>AT3G59850.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr3:22109343-22111566 REVERSE
Length = 388
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKT-APGRGGYVRHITYRNLTFDNVR 56
G+SIGS + GV N+TV+ + VRIK+ A G+ ++I +++ +NV+
Sbjct: 238 GISIGSLGKESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQ 297
Query: 57 VGIVVKTDYNEHPDEGFDPKAVP--RLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTF 113
IV+ D N P P V ++ D+ F +HG V V++ S + P +
Sbjct: 298 NPIVI--DQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRI 355
Query: 114 RDMSVGLTYKKK-HIFQCAFVQGRVIGTIFPAPC 146
+D V LTY+ K C+ G G P C
Sbjct: 356 QD--VKLTYRNKPATTDCSHAGGSEAGFQRPNSC 387
>AT1G05650.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:1690264-1692126 REVERSE
Length = 394
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 2 GVSIGSEMS----GGVSNVTVENLLVWSSRRAVRIKT-APGRGGYVRHITYRNLTFDNVR 56
GVSIGS GV NVTV + + S+ VRIK+ A G+VR++ ++NL NV+
Sbjct: 241 GVSIGSLAKQLNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQ 300
Query: 57 VGIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTFRD 115
I++ +Y + ++ +++ + G + +++ S+ P +T +D
Sbjct: 301 NPIIIDQNYCPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQD 360
Query: 116 MSVGLTYKK--KHIFQCAFVQGRVIGTIFPAPCEN 148
+ LTY K C G+ +G I P C N
Sbjct: 361 IK--LTYNKGTPATSLCFNAVGKNLGVIQPTSCLN 393
>AT3G57510.1 | Symbols: ADPG1 | ADPG1; polygalacturonase |
chr3:21283546-21285842 REVERSE
Length = 431
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VS + V+ S VRIKT G G ++I ++N+ +NV+
Sbjct: 288 GISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKN 347
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTFRDM 116
I++ DY + D+ D ++ +++++ + + G V + ++ SE+ P + + ++
Sbjct: 348 PIIIDQDYCDK-DKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENV 406
Query: 117 SVGLTYKKKHIFQCAFVQGRVIGTIFP 143
+ K C + GT+ P
Sbjct: 407 KI-----KGGTASCKNANVKNQGTVSP 428
>AT5G14650.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr5:4724509-4726328 FORWARD
Length = 435
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIG VSN+TV ++ + + VRIK+ G G V+ + + N+ NV
Sbjct: 267 GISIGGLGKDNTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSNVAN 326
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMS 117
I++ Y + + AV + +I++I + G + PVR S+ +P ++ +
Sbjct: 327 PIIIDQYYCDGGGCHNETSAVA-VSNINYINIKGTYTKEPVRFACSDSLPCTGISLSTIE 385
Query: 118 V 118
+
Sbjct: 386 L 386
>AT1G05660.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:1694286-1696058 REVERSE
Length = 394
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 2 GVSIGSEMS----GGVSNVTVENLLVWSSRRAVRIKT-APGRGGYVRHITYRNLTFDNVR 56
GVSIGS GV NVTV + + S+ VRIK+ A G+VR + +++L NV
Sbjct: 241 GVSIGSLAKELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVE 300
Query: 57 VGIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHG-QGVRVPVRIHGSEEIPVRNVTFRD 115
I++ +Y + + + ++ +++ + G + +++ S+ P +T +D
Sbjct: 301 NPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQD 360
Query: 116 MSVGLTYKK--KHIFQCAFVQGRVIGTIFPAPCEN 148
+ LTY K C G+ +G I P C N
Sbjct: 361 IK--LTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393
>AT1G60590.1 | Symbols: | polygalacturonase, putative / pectinase,
putative | chr1:22314426-22316867 REVERSE
Length = 540
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VSN+TV ++++ ++ VRIKT G G V+ I + N+ V++
Sbjct: 371 GISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGIGSVKGILFSNIQLTEVQL 430
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMS 117
IV+ Y +H + + + +E +++ + G PV S+ P +V +
Sbjct: 431 PIVIDQFYCDH-SKCMNHTSAVSVEGVTYEKIRGTYTVKPVHFACSDSFPCIDVQLSGIE 489
Query: 118 VGLTYKKKHIF 128
+ + H++
Sbjct: 490 LKPVQLQYHMY 500
>AT1G10640.1 | Symbols: | polygalacturonase | chr1:3515478-3517807
REVERSE
Length = 532
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 2 GVSIGSEMSGG----VSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS G VSN+TV ++ + ++ VRIKT G G V+ I + N+ + V++
Sbjct: 364 GISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGIIFSNIQLNQVQI 423
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQGVRVPVRIHGSEEIPVRNVTFRDMS 117
I + Y +H AV +E +++ + G PV S+ P +V +
Sbjct: 424 PITINQFYCDHSKCKNQTSAV-AVEGVTYERIKGTYTVKPVHFACSDNFPCVDVQLSSIE 482
Query: 118 VGLTYKKKHIF 128
+ +K ++
Sbjct: 483 LKPVQEKYRMY 493
>AT5G44840.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr5:18104851-18107127 REVERSE
Length = 381
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 2 GVSIGSEMSGG----VSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+S+GS G V NV V N + RIKT P GY ++I +++LTF +
Sbjct: 230 GISVGSVGRDGEESIVENVQVTNCTFIRTDNGARIKTWPNGKGYAKNILFKSLTFRETKN 289
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQG-VRVPVRIHGSEEIPVRNVTFRDM 116
I++ +Y + + AV + +++F + G + ++I S+ +++ +
Sbjct: 290 PIIIDQNYVDKGRLDVEESAVA-ISNVTFTDLRGTSKLDEIIKIDCSKVTYCKDIVLDKI 348
Query: 117 SVGLTYKKKHIFQCAFVQGRVI 138
+ K I +C+ V G+ I
Sbjct: 349 DIATVDGNKPIVECSNVYGKSI 370
>AT1G48100.1 | Symbols: | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
chr1:17766921-17769625 FORWARD
Length = 475
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 2 GVSIGS----EMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRV 57
G+SIGS VSN+TV N ++ S +R+KT G G V ++ + N+ +NV
Sbjct: 306 GISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLN 365
Query: 58 GIVVKTDYNEHPDEGFDPKAVPRLEDISFIGVHGQ-GVRV-PVRIHGSEEIPVRNVTFRD 115
I+V Y + D + AV ++ D+ + + G VR P+ S+ + N+T +
Sbjct: 366 CIIVDQYYCQSKDCRNETSAV-KVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSE 424
Query: 116 MSV 118
+ +
Sbjct: 425 VEL 427