Jatropha Genome Database

JcCB0008641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008641.10 + phase: 2 /pseudo/partial
         (246 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14900.1 | Symbols:  | unknown protein | chr3:5013442-5015277...   271   3e-73

>AT3G14900.1 | Symbols:  | unknown protein | chr3:5013442-5015277
           REVERSE
          Length = 611

 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 148/169 (87%), Gaps = 3/169 (1%)

Query: 42  PWEQWTLVSEVVLEAGK-QRIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQCR 100
           PWEQWTLVSEVV+EA K QR+DKWNLMGRLGN++R LI QCAAWFRPDI+YVK+PV+QCR
Sbjct: 247 PWEQWTLVSEVVVEADKKQRLDKWNLMGRLGNKSRSLICQCAAWFRPDIVYVKKPVFQCR 306

Query: 101 FEPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDDV 160
           FEPQEDFF  L+P+L+P TE  F+ E+  E+D G VE+ TYY GLCK++KV Q A+VDDV
Sbjct: 307 FEPQEDFFNSLIPYLNPVTESGFVCEV--EDDEGRVELSTYYGGLCKMLKVRQTAFVDDV 364

Query: 161 VNAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGCDAP 209
           VNAYEKLS+EKKSR L+FLL NHP +LLHPYTKEWKAKLEEMELGCDAP
Sbjct: 365 VNAYEKLSDEKKSRVLKFLLGNHPNELLHPYTKEWKAKLEEMELGCDAP 413