Jatropha Genome Database

JcCB0008631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.30 + phase: 0 /partial
         (197 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47300.1 | Symbols: SELT | SELT (SELT-LIKE PROTEIN PRECURSOR)...   199   1e-51
AT5G58640.1 | Symbols:  | selenoprotein-related | chr5:23697996-...   196   7e-51
AT5G58640.2 | Symbols:  | selenoprotein-related | chr5:23697996-...   196   1e-50

>AT3G47300.1 | Symbols: SELT | SELT (SELT-LIKE PROTEIN PRECURSOR);
           selenium binding | chr3:17428685-17429555 REVERSE
          Length = 209

 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/197 (53%), Positives = 129/197 (65%), Gaps = 21/197 (10%)

Query: 1   MDRSQXXXXXXXXXXXXTDIVNLFTIQPPPKPALNDYNIIXXXXXXXXXXXXXXXXXXXX 60
           MD++Q            +D+ NLFT  PPPK        I                    
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFT-PPPPKSQHQSPPSISETLDF-------------- 45

Query: 61  XKSPSMAIGGLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLP 120
              P+    G+G    G+TV I+FC SCSY+GTA++MK MLE+ FPG+++VLANYP   P
Sbjct: 46  ---PAQKSTGVG---YGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAP 99

Query: 121 KRLLSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQ 180
           KR+L+KVVPV Q G+IGLIMGGEQIFP +G A PP+WY+SLRANRFGS+ASTWL GNF+Q
Sbjct: 100 KRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQ 159

Query: 181 SFLQSSGAFEVYCNGEL 197
           SFLQSSGAFEV CNGEL
Sbjct: 160 SFLQSSGAFEVSCNGEL 176


>AT5G58640.1 | Symbols:  | selenoprotein-related |
           chr5:23697996-23699505 FORWARD
          Length = 228

 Score =  196 bits (499), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 111/134 (82%), Gaps = 1/134 (0%)

Query: 64  PSMAIGGLGDT-GTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLPKR 122
           PS    GLG   G G+TV I+FC SCSY+GTA+TMK MLET FPG++++LANYPP  PKR
Sbjct: 59  PSQKTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKR 118

Query: 123 LLSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQSF 182
           LL+KVVPV Q G+IG+I+ G++I P +G   PP+W++SLRANRFGS+ASTWL GNF+QS+
Sbjct: 119 LLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSY 178

Query: 183 LQSSGAFEVYCNGE 196
           LQSSGAFEV+CNGE
Sbjct: 179 LQSSGAFEVHCNGE 192


>AT5G58640.2 | Symbols:  | selenoprotein-related |
           chr5:23697996-23699505 FORWARD
          Length = 227

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 110/133 (82%)

Query: 64  PSMAIGGLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLPKRL 123
           PS   G  G  G G+TV I+FC SCSY+GTA+TMK MLET FPG++++LANYPP  PKRL
Sbjct: 59  PSQTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRL 118

Query: 124 LSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQSFL 183
           L+KVVPV Q G+IG+I+ G++I P +G   PP+W++SLRANRFGS+ASTWL GNF+QS+L
Sbjct: 119 LAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYL 178

Query: 184 QSSGAFEVYCNGE 196
           QSSGAFEV+CNGE
Sbjct: 179 QSSGAFEVHCNGE 191