Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26790.1 | Symbols: FUS3 | FUS3 (FUSCA 3); DNA binding / tran...    56   8e-09

>AT3G26790.1 | Symbols: FUS3 | FUS3 (FUSCA 3); DNA binding /
           transcription activator/ transcription factor |
           chr3:9854025-9855748 REVERSE
          Length = 313

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%)

Query: 121 ARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
           AR ID R+L FLFQKELKNSDVSSL+RMILPK
Sbjct: 80  ARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111