Jatropha Genome Database

JcCB0008031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008031.20 + phase: 0 
         (481 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08550.2 | Symbols: NPQ1, AVDE1 | NPQ1 (NON-PHOTOCHEMICAL QUE...   582   e-166
AT1G08550.1 | Symbols: NPQ1, AVDE1 | NPQ1 (NON-PHOTOCHEMICAL QUE...   582   e-166

>AT1G08550.2 | Symbols: NPQ1, AVDE1 | NPQ1 (NON-PHOTOCHEMICAL
           QUENCHING 1); violaxanthin de-epoxidase |
           chr1:2707462-2709387 FORWARD
          Length = 462

 Score =  582 bits (1501), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 286/392 (72%), Positives = 325/392 (82%), Gaps = 5/392 (1%)

Query: 95  AKEVLNFLMLSVSNNLKEKGQLQFLKVAGILACALLVIPSADAVDALKTCACLLKECRLE 154
           +K + + + L   N LKE      LK+ G+LACA L++PSADAVDALKTCACLLK CR+E
Sbjct: 71  SKGIFDIVPLPSKNELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIE 130

Query: 155 LXXXXXXXXXXXXXXXLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPKKS 214
           L               LQTCNNRPDETECQIKCGDLFEN+VVDEFNECAVSRKKCVP+KS
Sbjct: 131 LAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKS 190

Query: 215 DVGEFPVPDPAVLVKSFNIADFSGKWFITSGLNPTFDTFDCQLHDFHRES-NRLVGNLSW 273
           D+GEFP PDP+VLV++FNI+DF+GKW+ITSGLNPTFD FDCQLH+FH E  N+LVGN+SW
Sbjct: 191 DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 250

Query: 274 RIRTPDGGFFTRSTVQKFVQDPLQPGILYNHDNEYLHYQDDWYILSSKLENSENDYIFVY 333
           RI+T D GFFTRS VQKFVQDP QPG+LYNHDNEYLHYQDDWYILSSK+EN   DYIFVY
Sbjct: 251 RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 310

Query: 334 YRGRNDAWDGYGGAVVYTRSAVLPESIIPELETAAKKVGRDFNKFIITDNTCGPEPPLAE 393
           YRGRNDAWDGYGGAVVYTRS+VLP SIIPELE AAK +GRDF+ FI TDNTCGPEP L E
Sbjct: 311 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPALVE 370

Query: 394 RIEKTVEEGEK----TIIREVEEIEGNVEKVGKTEMALFQRLAEGFKELQQDEEFFVREL 449
           RIEKTVEEGE+     +    EE+E  VEKVG+TEM LFQRLAEGF EL+QDEE FVREL
Sbjct: 371 RIEKTVEEGERIIVKEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVREL 430

Query: 450 SKEEMDILNDLKMEAGEVEKLFGEALPLRKLR 481
           SKEEM+ L+++KMEA EVEKLFG+ALP+RK+R
Sbjct: 431 SKEEMEFLDEIKMEASEVEKLFGKALPIRKVR 462


>AT1G08550.1 | Symbols: NPQ1, AVDE1 | NPQ1 (NON-PHOTOCHEMICAL
           QUENCHING 1); violaxanthin de-epoxidase |
           chr1:2707462-2709387 FORWARD
          Length = 462

 Score =  582 bits (1501), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 286/392 (72%), Positives = 325/392 (82%), Gaps = 5/392 (1%)

Query: 95  AKEVLNFLMLSVSNNLKEKGQLQFLKVAGILACALLVIPSADAVDALKTCACLLKECRLE 154
           +K + + + L   N LKE      LK+ G+LACA L++PSADAVDALKTCACLLK CR+E
Sbjct: 71  SKGIFDIVPLPSKNELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIE 130

Query: 155 LXXXXXXXXXXXXXXXLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPKKS 214
           L               LQTCNNRPDETECQIKCGDLFEN+VVDEFNECAVSRKKCVP+KS
Sbjct: 131 LAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKS 190

Query: 215 DVGEFPVPDPAVLVKSFNIADFSGKWFITSGLNPTFDTFDCQLHDFHRES-NRLVGNLSW 273
           D+GEFP PDP+VLV++FNI+DF+GKW+ITSGLNPTFD FDCQLH+FH E  N+LVGN+SW
Sbjct: 191 DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 250

Query: 274 RIRTPDGGFFTRSTVQKFVQDPLQPGILYNHDNEYLHYQDDWYILSSKLENSENDYIFVY 333
           RI+T D GFFTRS VQKFVQDP QPG+LYNHDNEYLHYQDDWYILSSK+EN   DYIFVY
Sbjct: 251 RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 310

Query: 334 YRGRNDAWDGYGGAVVYTRSAVLPESIIPELETAAKKVGRDFNKFIITDNTCGPEPPLAE 393
           YRGRNDAWDGYGGAVVYTRS+VLP SIIPELE AAK +GRDF+ FI TDNTCGPEP L E
Sbjct: 311 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPALVE 370

Query: 394 RIEKTVEEGEK----TIIREVEEIEGNVEKVGKTEMALFQRLAEGFKELQQDEEFFVREL 449
           RIEKTVEEGE+     +    EE+E  VEKVG+TEM LFQRLAEGF EL+QDEE FVREL
Sbjct: 371 RIEKTVEEGERIIVKEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVREL 430

Query: 450 SKEEMDILNDLKMEAGEVEKLFGEALPLRKLR 481
           SKEEM+ L+++KMEA EVEKLFG+ALP+RK+R
Sbjct: 431 SKEEMEFLDEIKMEASEVEKLFGKALPIRKVR 462