Jatropha Genome Database

JcCB0007881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0007881.10 + phase: 2 /TE
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    68   5e-12

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 4/125 (3%)

Query: 85  RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKL- 143
           R+ST+G C FLG++L+S  SKKQ  V+ S+ EA+Y        +++W+ Q   +  L L 
Sbjct: 457 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 516

Query: 144 ETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDH-VQKGYIIIEFIPTEKQLADIF 202
           +   + C+N + I+++ N V H RTKHIE   H +R+  V +  +   F   ++Q  D F
Sbjct: 517 KPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--DGF 574

Query: 203 TKPLN 207
           T+ L+
Sbjct: 575 TEYLS 579