Jatropha Genome Database

JcCB0007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0007071.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33500.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    68   2e-12

>AT1G33500.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: sperm cell,
           embryo, flower; EXPRESSED DURING: petal differentiation
           and expansion stage, D bilateral stage; BEST Arabidopsis
           thaliana protein match is: kinase interacting family
           protein (TAIR:AT3G22790.1); Has 3639 Blast hits to 2952
           proteins in 364 species: Archae - 50; Bacteria - 374;
           Metazoa - 1667; Fungi - 244; Plants - 133; Viruses - 6;
           Other Eukaryotes - 1165 (source: NCBI BLink). |
           chr1:12152774-12154680 FORWARD
          Length = 276

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 88  QVKQSIDQVRSKEKEFKPELLVMDIMTLEEEYKALLSDKDGEFEYLQSLQGQIGKLK 144
           ++K SI+ V+ K  EFKPEL+ +DI  LEEEY ALLSD+ GE EYL SLQ Q  KLK
Sbjct: 179 KIKLSIENVKHKINEFKPELMSVDIKILEEEYTALLSDESGEAEYLSSLQSQAEKLK 235