Jatropha Genome Database

JcCB0006821.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.30 + phase: 0 
         (362 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63100.1 | Symbols:  | unknown protein | chr5:25314434-253154...   365   e-101
AT5G44600.1 | Symbols:  | unknown protein | chr5:17989867-179915...   164   1e-40
AT5G44590.1 | Symbols:  | unknown protein | chr5:17987591-179892...   142   3e-34

>AT5G63100.1 | Symbols:  | unknown protein | chr5:25314434-25315423
           REVERSE
          Length = 329

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/304 (66%), Positives = 241/304 (79%), Gaps = 8/304 (2%)

Query: 59  SSPKTKISIQSNPKSKTLQTETSVQPNSRNKTRRQEDGIPTEDIQIIAKFKSRYNYIRVL 118
           SSP   ++++  P    +   T    + RNKT   ++GIP ED++ IAKFKSR+NYIRV+
Sbjct: 25  SSPPLTLNLRPKPPQNPIFIRTD---SHRNKTSADDNGIPAEDVKTIAKFKSRHNYIRVI 81

Query: 119 EVSRKVDHPLAGSRLLLLDDPGNIHSISFSHKLLTNTYFDVFATLPPILPPGPVAILGFG 178
           EVSRK +HPLAGSRLLLLD+PGNIHSISF  K LT++YFDVFATLPPI+PPGP+ ILGFG
Sbjct: 82  EVSRKTNHPLAGSRLLLLDNPGNIHSISFLLKTLTDSYFDVFATLPPIIPPGPIGILGFG 141

Query: 179 AGSAARLILELY-QNGRVHGWELDPSVIAVGRKYFGLERLERDFSDRLFIYIGNALSLES 237
           AGS ARLILELY     VHGWELDPSVI VGR++FGL +LERD  DR+FI IG+AL+  +
Sbjct: 142 AGSTARLILELYPPEIAVHGWELDPSVIDVGREFFGLSKLERDHKDRIFINIGDALN--A 199

Query: 238 YVRDGFSGILVDLFSKGSVIPELQDPNTWEEFTRCLRKGGRIMVNVGGRCVEAEDKRRDG 297
            V+ GFSGILVDLFSKGSVI ELQDP  WE+    LR  GRIMVNVGG+CVEAED  RDG
Sbjct: 200 SVKTGFSGILVDLFSKGSVIKELQDPQVWEDLKSRLRYRGRIMVNVGGKCVEAEDSDRDG 259

Query: 298 AVVMQDTLKAMHQVFGDNLFVLSLGSQNDDSTIALTGELPDLDAWKSVVPRS-LRFYMDM 356
           A+VM++TL+ M QVFGD LFVL+LG+ N DS++ALTG+LPDLDAWK  +PRS LR Y+DM
Sbjct: 260 ALVMEETLRVMSQVFGDKLFVLTLGNGN-DSSVALTGDLPDLDAWKKRLPRSELRSYVDM 318

Query: 357 WTPY 360
           W PY
Sbjct: 319 WIPY 322


>AT5G44600.1 | Symbols:  | unknown protein | chr5:17989867-17991519
           FORWARD
          Length = 333

 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 142/262 (54%), Gaps = 16/262 (6%)

Query: 104 IIAKFKSRYNYIRVLEVSRKVDHPLAGSRLLLLDDPGNIHS-ISFSHKLLTNTYFDVFAT 162
           ++   +SRYN I +++         A SR LLLD   N+HS I+   +  T +Y+D FA+
Sbjct: 76  VVTAVRSRYNEIVIVDT--------ASSRYLLLDSTKNVHSVINKGGQNWTGSYWDEFAS 127

Query: 163 LPPILPPGPVAILGFGAGSAARLILELYQNGRVHGWELDPSVIAVGRKYFGLERLERDFS 222
           LPPI+P GPVAI G G G+AARL+LEL+   ++ GWE+D  +I   R Y GL  LE+  S
Sbjct: 128 LPPIIPNGPVAIYGLGGGTAARLMLELWPTMQLEGWEIDEILIEKARDYLGLSELEKPTS 187

Query: 223 D--RLFIYIGNALSLESYVRDGFSGILVDLFSKGSVIPELQDPNTWEEFTRCLRKGGRIM 280
              RL +++ +ALS    V   ++GI+VDLF+ G V+ +LQ+   W E    L   GRIM
Sbjct: 188 KGGRLCVHVDDALSPSQDVSGRYAGIIVDLFADGKVLDQLQEVPIWLELASRLMPNGRIM 247

Query: 281 VNVGGRCVEAEDKR-----RDGAVVMQDTLKAMHQVFGDNLFVLSLGSQNDDSTIALTGE 335
           VN  G   E ++ +      D A ++  T+K + + F   +           + +ALTG 
Sbjct: 248 VNCAGIETELQNGKPQLLLDDSAGMLNSTVKILSEAFPGQVCWKRTPDSEGLNFLALTGG 307

Query: 336 LPDLDAWKSVVPRSLRFYMDMW 357
           LPDL  W S VP      +  W
Sbjct: 308 LPDLSDWSSKVPVRFCEVVKQW 329


>AT5G44590.1 | Symbols:  | unknown protein | chr5:17987591-17989227
           FORWARD
          Length = 349

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 104 IIAKFKSRYNYIRVLEVSRKVDHPLAGSRLLLLDDPGNIHS-ISFSHKLLTNTYF----- 157
           ++   KSRYN I +++           SR LLLD   N+HS I+   +  T  Y+     
Sbjct: 62  VVTAVKSRYNEIVIVDT--------FASRYLLLDSTRNVHSVINKGGQNWTGAYWVNVVI 113

Query: 158 -------------DVFATLPPILPPGPVAILGFGAGSAARLILELYQNGRVHGWELDPSV 204
                        D  A LPPI+P GP+AI G G G+AARLILEL+ +  + GWE+D  +
Sbjct: 114 VFNFESYQHFCLKDESACLPPIIPNGPIAIYGLGGGTAARLILELWPSTELEGWEIDEIL 173

Query: 205 IAVGRKYFGLERLERDFSD--RLFIYIGNALSLESYVRDGFSGILVDLFSKGSVIPELQD 262
           I   R Y GL  LE   S   RL I++ +ALS        ++GI+VDLF+ G V+ +LQ+
Sbjct: 174 IEKARDYLGLSELEIPTSKGGRLCIHVDDALSPCQDDSKRYAGIIVDLFADGKVLDQLQE 233

Query: 263 PNTWEEFTRCLRKGGRIMVNVGGRCVEAEDKR-----RDGAVVMQDTLKAMHQVFGDNLF 317
              W E    L   GR+MVN  G   E ++ +      D A ++  T+K + + F   + 
Sbjct: 234 IPMWLELASRLMPNGRLMVNCAGIETEVKNGKPELVLDDLAWMLNSTVKILSEAFPGQVS 293

Query: 318 VLSLGSQNDDSTIALTGELPDLDAWKSVVPRSLRFYMDMW 357
                     + +ALTG LPDL  W S VP  L   + +W
Sbjct: 294 WKRTPDSEGLNFVALTGGLPDLSDWSSKVPVRLSESVKLW 333