Jatropha Genome Database

JcCB0006421.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.30 + phase: 0 /partial
         (233 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA bindin...   114   4e-26
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   111   3e-25
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   111   3e-25
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   108   3e-24
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   108   3e-24
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...    79   3e-15

>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding /
           protein heterodimerization/ transcription factor |
           chr1:17634937-17637557 FORWARD
          Length = 396

 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 109/185 (58%), Gaps = 17/185 (9%)

Query: 62  PQYGH--PSDNNKSNQLSNNIPFA--FQLHAEETHSAFSKLAQLKQTNEKVNHEAQYG-- 115
           P+Y    PS  N+   +S ++P +    L +     ++S++ Q  Q + K NH  Q G  
Sbjct: 34  PRYSSLTPSSTNRPFSVSQSLPNSQLSPLISPHWDDSYSQITQKVQKSRK-NHRIQLGSI 92

Query: 116 ----GQEPFAKHNKVPNHVLDPQSATRSKRINRAKV-SKNGKLGIQGSNAESPNG-LNPA 169
               G E       +      PQ+  R    N++K  +K  K G + +N E  NG LN A
Sbjct: 93  ANMSGGESIDIAKVIVKQESSPQNVKRV--YNKSKGGTKLLKAGKRMANGEVQNGGLNGA 150

Query: 170 T-GCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIE 228
           +  CRYDSSLGLLT+KFVKLIQE +DGTLDLN  A VLE VQKRRIYDITNVLEGI LIE
Sbjct: 151 SINCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLE-VQKRRIYDITNVLEGIGLIE 209

Query: 229 KTSKN 233
           KT+KN
Sbjct: 210 KTTKN 214


>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 469

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 75/98 (76%), Gaps = 4/98 (4%)

Query: 138 RSKRINR-AKVSKNGKLGIQGSNAESP-NGLNPATGCRYDSSLGLLTRKFVKLIQEDKDG 195
           ++K+ +R AK +K+G L   GSNA SP N    A  CRYDSSLGLLT+KF+ LI++ +DG
Sbjct: 93  KAKKTSRSAKSNKSGTLA-SGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDG 151

Query: 196 TLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
            LDLN+ AD LE VQKRRIYDITNVLEGI LIEKT KN
Sbjct: 152 ILDLNKAADTLE-VQKRRIYDITNVLEGIGLIEKTLKN 188


>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 466

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 75/98 (76%), Gaps = 4/98 (4%)

Query: 138 RSKRINR-AKVSKNGKLGIQGSNAESP-NGLNPATGCRYDSSLGLLTRKFVKLIQEDKDG 195
           ++K+ +R AK +K+G L   GSNA SP N    A  CRYDSSLGLLT+KF+ LI++ +DG
Sbjct: 93  KAKKTSRSAKSNKSGTLA-SGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDG 151

Query: 196 TLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
            LDLN+ AD LE VQKRRIYDITNVLEGI LIEKT KN
Sbjct: 152 ILDLNKAADTLE-VQKRRIYDITNVLEGIGLIEKTLKN 188


>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 483

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 4/103 (3%)

Query: 134 QSATRSKRIN---RAKVSKNGKLGIQGSNAESPNGLNPATGCRYDSSLGLLTRKFVKLIQ 190
           Q+  +  R+N   +AK +K+       +NA SP  L P+  CRYDSSLGLLT+KFV LI+
Sbjct: 125 QTPRKGGRVNIKSKAKGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIK 184

Query: 191 EDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
           + KDG LDLN+ A+ LE VQKRRIYDITNVLEGI LIEK  KN
Sbjct: 185 QAKDGMLDLNKAAETLE-VQKRRIYDITNVLEGIDLIEKPFKN 226


>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 485

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 4/103 (3%)

Query: 134 QSATRSKRIN---RAKVSKNGKLGIQGSNAESPNGLNPATGCRYDSSLGLLTRKFVKLIQ 190
           Q+  +  R+N   +AK +K+       +NA SP  L P+  CRYDSSLGLLT+KFV LI+
Sbjct: 125 QTPRKGGRVNIKSKAKGNKSTPQTPISTNAGSPITLTPSGSCRYDSSLGLLTKKFVNLIK 184

Query: 191 EDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
           + KDG LDLN+ A+ LE VQKRRIYDITNVLEGI LIEK  KN
Sbjct: 185 QAKDGMLDLNKAAETLE-VQKRRIYDITNVLEGIDLIEKPFKN 226


>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 514

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 45/54 (83%), Gaps = 1/54 (1%)

Query: 180 LLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
           LLT+KFV LI++ KDG LDLN+ A+ LEV QKRRIYDITNVLEGI LIEK  KN
Sbjct: 220 LLTKKFVNLIKQAKDGMLDLNKAAETLEV-QKRRIYDITNVLEGIDLIEKPFKN 272