Jatropha Genome Database

JcCB0006421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.20 + phase: 0 
         (427 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45730.1 | Symbols:  | eukaryotic initiation factor 3 gamma s...   489   e-138

>AT2G45730.1 | Symbols:  | eukaryotic initiation factor 3 gamma
           subunit family protein | chr2:18836519-18839123 REVERSE
          Length = 446

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/417 (61%), Positives = 319/417 (76%), Gaps = 19/417 (4%)

Query: 13  NPRVTWEGCSVLLDINDGDRLVFSRLTPGSNLKIGNKNLSLRPLIGCPFGSLFQIENGKE 72
           NPR   EGCSVLLDINDGDRLVF+RL+ G+ LKIGNKN SL+PLIG PFGSLFQ+E G++
Sbjct: 20  NPRFACEGCSVLLDINDGDRLVFARLSSGAILKIGNKNYSLKPLIGAPFGSLFQVETGED 79

Query: 73  GPCLSRFIPSKQADLYNACYLGNNAEEKSDCEMIDESRDNRALIDNNKAQSLTGDDIDAM 132
           G  LSR +P KQ              E +   ++D+SRDNR ++DNN+AQ+LTG++I+AM
Sbjct: 80  GSFLSRILPIKQ--------------ESNSNNVMDDSRDNREIVDNNEAQNLTGEEIEAM 125

Query: 133 RRQGAKGEEIIDALIANSATFEKKTLFSQEKYRLKKQKKYAPRVLLRRPFTRSICETYFK 192
           RR+GAKG+EII+ALIANS TF+KK   SQEKY+LKKQKKYAP++LLRRPF RSICE YFK
Sbjct: 126 RREGAKGDEIIEALIANSKTFDKKFQLSQEKYKLKKQKKYAPKLLLRRPFARSICEAYFK 185

Query: 193 KYPARIGYLRIDALSLLLSMANVTANSDILVMDMVGGLLTGAVAERLGGTGYVCSTYLGD 252
           KYPARIG+LR+DALSLLL+MANVTA SD+LV+DMVGGL+TGAVAERLGGTGYVC+TY G 
Sbjct: 186 KYPARIGFLRVDALSLLLTMANVTAYSDVLVVDMVGGLVTGAVAERLGGTGYVCNTYKGS 245

Query: 253 TPHSVDIVRMFNFNNDICKRIVRASLSDLCLAQNETSNQSCAHEDAPMESN--GQTXXXX 310
           +P+ V++VRMFNF++ + KRIV++S+++L  A+  ++  +   E      N   +T    
Sbjct: 246 SPYPVEMVRMFNFSDKVLKRIVQSSINELSSAKTASTEGNNQQEGVCKAENNINETATSD 305

Query: 311 XXXXXXXXXPEAADIDPDPTASPASKISKVHKAGERATDEALKLWKENGFSSLIIAAPDL 370
                     EA  +D      P SKI K  KAG +A+ E +++W+ENGFSSLI+AA D 
Sbjct: 306 VMVEEISVTTEAGVVD---IVVPESKIIKAAKAGAKASKETIEMWQENGFSSLIMAAQDQ 362

Query: 371 DPWSLVNEILPLLSYSAPFAIYHQYLQPLATCMHNLQLGKMAIGLQISEPWLREYQV 427
           DPW +  ++LPLLSYSAPFAIYHQYLQPLATCMH LQ GKMAI LQI+EPWLREYQV
Sbjct: 363 DPWIVAKDVLPLLSYSAPFAIYHQYLQPLATCMHKLQQGKMAINLQITEPWLREYQV 419