Jatropha Genome Database

JcCB0006421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.10 - phase: 0 
         (211 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75710.1 | Symbols:  | zinc finger (C2H2 type) family protein...   166   1e-41

>AT1G75710.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr1:28428806-28431128 FORWARD
          Length = 462

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 117/230 (50%), Gaps = 41/230 (17%)

Query: 1   MALLTFLPEQREKGXXXXXXXXXXXXXXXXX-------------------XXPSSWDQIK 41
           MALLTFLPE  E                                        PSSWDQIK
Sbjct: 1   MALLTFLPENAEAPQKHKPTSSKRKKRDNPTDQTQTQKHKPQKPKKAVPPKQPSSWDQIK 60

Query: 42  NLLTCKQVEDSSVHDPSKNXXXXXXXXXXXXXXX---------XFRDVVHGNTRVVDRAD 92
           NLLTCKQ+E S VHDPSKN                         FRDV HGNTRVV RAD
Sbjct: 61  NLLTCKQIEGSRVHDPSKNSQSGPSMTTNLSPSKLGSSCSSICSFRDVAHGNTRVVHRAD 120

Query: 93  NSPE---SSIVGQETGLLSRKP-------VXXXXXXXXXXXXXXXXXATYTSSSRGMQFR 142
           +SP+   S+    ET LL+RKP                         ++ T+S R MQFR
Sbjct: 121 HSPDVGNSATPNSETRLLTRKPGQHGSSSSRSLTSGSTRSNASGSYTSSSTTSFRAMQFR 180

Query: 143 KLSGCYECHMIVDPSRYP-TPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           KLSGCYECHMIVDPSRYP +PR  +CACS CGEVFPK ESLELHQ VRHA
Sbjct: 181 KLSGCYECHMIVDPSRYPISPR--VCACSQCGEVFPKLESLELHQAVRHA 228