Jatropha Genome Database

JcCB0005881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005881.10 - phase: 0 
         (429 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17810.1 | Symbols:  | dihydroorotate dehydrogenase family pr...   707   0.0  
AT5G23300.1 | Symbols: PYRD | PYRD (pyrimidine d); dihydroorotat...    49   8e-06

>AT3G17810.1 | Symbols:  | dihydroorotate dehydrogenase family
           protein / dihydroorotate oxidase family protein |
           chr3:6094279-6096289 FORWARD
          Length = 426

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/434 (78%), Positives = 380/434 (87%), Gaps = 13/434 (2%)

Query: 1   MASLSFTQIR-----GRHSLAEFAAVRTRQTSLTNQRLRNRIGSLRVVADAGAKGEPDLS 55
           MAS+SF   R      + +L+      +R++ L   R+  +I S        A+ EPDLS
Sbjct: 1   MASMSFALNRFSGLSSKTTLSADFDPSSRRSFLPPTRVGLKISS-------AAESEPDLS 53

Query: 56  VTVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLR 115
           VTVNGL+MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLR
Sbjct: 54  VTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLR 113

Query: 116 AGANGSAKGQIIGWENIELISDRPLETMLSEFKRLKEEYPERILIASIMEEYDKAAWEEL 175
            G+NGSAK  +IGW+NIELISDRPLETML EF+RLK+EYP+RILIAS+MEEY+K AWEEL
Sbjct: 114 TGSNGSAKTDVIGWQNIELISDRPLETMLKEFERLKKEYPDRILIASVMEEYNKTAWEEL 173

Query: 176 IDRVEQTGIDAIEVNFSCPHGMPERKMGAAVGQDCVLLEEVCGWVNAKATVPVWAKMTPN 235
           IDRVEQTG+DA+E+NFSCPHGMPER+MGAAVGQDC LL+EVCGW+NAKATVPVWAKMTPN
Sbjct: 174 IDRVEQTGVDALEINFSCPHGMPERRMGAAVGQDCALLDEVCGWINAKATVPVWAKMTPN 233

Query: 236 ITDITQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIA 295
           ITDIT+PARV+L SGCEG+AAINTIMSVMGI++KTLRPEPCVEGYSTPGGYS KAV PIA
Sbjct: 234 ITDITEPARVSLKSGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIA 293

Query: 296 LGKVMNIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQVCTGVMMHGYGLVK 355
           L KVMNIAKMMKSEF+ E  SLSGIGGVETG DAAEFILLG++TVQVCTGVMMHGYG VK
Sbjct: 294 LAKVMNIAKMMKSEFS-EDRSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVK 352

Query: 356 KLCEELKDFMKMHNFSSIEDFRGASLDYFTTHTDLVRRQKEAIELRKAVKKGLQSDKDWT 415
            LC ELKDFMK HNFS+IE+FRG SL YFTTHTDLV+RQKEA+E RKA K+GL+SDKDWT
Sbjct: 353 TLCAELKDFMKQHNFSTIEEFRGHSLQYFTTHTDLVKRQKEAVEQRKAEKRGLKSDKDWT 412

Query: 416 GDGFVKETESMVSN 429
           GDGFVKETESMVSN
Sbjct: 413 GDGFVKETESMVSN 426


>AT5G23300.1 | Symbols: PYRD | PYRD (pyrimidine d); dihydroorotate
           dehydrogenase | chr5:7847792-7850243 REVERSE
          Length = 460

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 18/157 (11%)

Query: 227 PVWAKMTPNIT--DITQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEG--YST 282
           P+  K+ P+++  ++   A VAL+   +G+   NT +S         RP+        + 
Sbjct: 315 PLLVKIAPDLSRGELEDIAAVALALHLDGLIISNTTVS---------RPDAVSNNPVATE 365

Query: 283 PGGYSSKAVHPIALGKVMNIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQV 342
            GG S K +  ++   + ++  + + +       L G GGV +G DA + I  GA+ VQ+
Sbjct: 366 TGGLSGKPLFALSTNMLRDMYTLTRGKI-----PLIGCGGVSSGEDAYKKIRAGATLVQL 420

Query: 343 CTGVMMHGYGLVKKLCEELKDFMKMHNFSSIEDFRGA 379
            TG    G  L+ ++ EEL   ++   F SI +  GA
Sbjct: 421 YTGFAYGGPALIPQIKEELVKCLERDGFKSIHEAIGA 457