Jatropha Genome Database

JcCB0005461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.20 - phase: 0 
         (170 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13440.1 | Symbols:  | calcium-binding EF hand family protein...   129   1e-30

>AT4G13440.1 | Symbols:  | calcium-binding EF hand family protein |
           chr4:7810215-7810679 FORWARD
          Length = 154

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)

Query: 1   MEEISETAKAYYANVSEKQKRLAKDLFNEMDKDGDGKITFDEYEQYIKHKKGYKTISTPD 60
           M+E+ E A AYY N S +Q+ L+   F  MD +GDG+++  EY  +++   G   I  P+
Sbjct: 1   MDELHEAAIAYYNNGSMEQQNLSWQFFRAMDVNGDGRVSLQEYTDFLRQTAGLAWIH-PE 59

Query: 61  FFKKFDEDGNGTLDFDEIVTVHYICASQRIFFCDECRVFLDGVYFTCVQCFNGS-GNTYD 119
            F++ D +G+G LDF E++T++Y+ A  R   C  C   L+G+YFTCV CF  S GNT+D
Sbjct: 60  MFRELDRNGDGQLDFWEVLTLYYV-ARTRTINCRTCLRILNGLYFTCVTCFESSCGNTFD 118

Query: 120 LCISCYRDKDINHHKDALFLDNYTLLQSNR 149
           LC+ CY  +    H   LFLD+Y LL+S R
Sbjct: 119 LCVKCYMRRTYC-HPHRLFLDSYVLLRSRR 147